RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 ENTPD1P49961 510 aa12.88□□□□□ -0.35
CLK3-223ENST00000568488 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.88□□□□□ -0.35
CLK3-223ENST00000568488 C18orf65Q6ZTR6 163 aa12.88□□□□□ -0.35
CLK3-223ENST00000568488 ZNRF4Q8WWF5 429 aa12.88□□□□□ -0.35
CLK3-223ENST00000568488 FGF23Q9GZV9 251 aaPredicted RBP12.88□□□□□ -0.35
CLK3-223ENST00000568488 DNAJC27Q9NZQ0 273 aa12.88□□□□□ -0.35
CLK3-223ENST00000568488 STARD9Q9P2P6 4700 aa12.88□□□□□ -0.35
CLK3-223ENST00000568488 CSMD3Q7Z407 3707 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 TRBV4-1A0A0J9YWV2 114 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 PSMB11A5LHX3 300 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 C17orf98A8MV24 154 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 FAM90A22PA8MWA6 464 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 CHATP28329 748 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 PRDX2P32119 198 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 DCTDP32321 178 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 SLC15A1P46059 708 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 GPM6AP51674 278 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 LUMP51884 338 aaPredicted RBP12.87□□□□□ -0.35
CLK3-223ENST00000568488 RPL23AP62750 156 aaKnown RBP12.87□□□□□ -0.35
CLK3-223ENST00000568488 EIF2B1Q14232 305 aaKnown RBP12.87□□□□□ -0.35
CLK3-223ENST00000568488 SEC23BQ15437 767 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 FAM76BQ5HYJ3 339 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 ZNF770Q6IQ21 691 aaPredicted RBP12.87□□□□□ -0.35
CLK3-223ENST00000568488 ADAMTSL5Q6ZMM2 481 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 ZNF329Q86UD4 541 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 CALHM1Q8IU99 346 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 OSR2Q8N2R0 312 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 CD177Q8N6Q3 437 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 OR11H6Q8NGC7 330 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 OR52J3Q8NH60 311 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 ZNF671Q8TAW3 534 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 STMN2Q93045 179 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 PGAM5Q96HS1 289 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 HSH2DQ96JZ2 352 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 MYLK2Q9H1R3 596 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 OR10A2Q9H208 303 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 ABCB9Q9NP78 766 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 ZNF319Q9P2F9 582 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 FAM32AQ9Y421 112 aaKnown RBP12.87□□□□□ -0.35
CLK3-223ENST00000568488 ENPP4Q9Y6X5 453 aa12.87□□□□□ -0.35
CLK3-223ENST00000568488 A0A1W2PRQ8 180 aa12.86□□□□□ -0.35
CLK3-223ENST00000568488 ZNF593O00488 134 aaPredicted RBP12.86□□□□□ -0.35
CLK3-223ENST00000568488 MRASO14807 208 aa12.86□□□□□ -0.35
CLK3-223ENST00000568488 SLC22A2O15244 555 aa12.86□□□□□ -0.35
CLK3-223ENST00000568488 ZNF121P58317 390 aaPredicted RBP12.86□□□□□ -0.35
CLK3-223ENST00000568488 GRB2P62993 217 aaKnown RBP12.86□□□□□ -0.35
CLK3-223ENST00000568488 DGCR6Q14129 220 aa12.86□□□□□ -0.35
CLK3-223ENST00000568488 LCN8Q6JVE9 175 aa12.86□□□□□ -0.35
CLK3-223ENST00000568488 C16orf82Q7Z2V1 217 aa12.86□□□□□ -0.35
CLK3-223ENST00000568488 ZDHHC23Q8IYP9 409 aa12.86□□□□□ -0.35
CLK3-223ENST00000568488 ZNF561Q8N587 486 aa12.86□□□□□ -0.35
CLK3-223ENST00000568488 HPSE2Q8WWQ2 592 aa12.86□□□□□ -0.35
CLK3-223ENST00000568488 DUX3Q96PT4 197 aa12.86□□□□□ -0.35
CLK3-223ENST00000568488 SLC25A33Q9BSK2 321 aa12.86□□□□□ -0.35
CLK3-223ENST00000568488 LIN7BQ9HAP6 207 aa12.86□□□□□ -0.35
CLK3-223ENST00000568488 VNN3Q9NY84 501 aa12.86□□□□□ -0.35
CLK3-223ENST00000568488 GMPR2Q9P2T1 348 aaKnown RBP12.86□□□□□ -0.35
CLK3-223ENST00000568488 COMMD3-BMI1R4GMX3 469 aa12.86□□□□□ -0.35
CLK3-223ENST00000568488 ZNF732B4DXR9 585 aa12.85□□□□□ -0.35
CLK3-223ENST00000568488 MTRF1O75570 445 aaKnown RBP12.85□□□□□ -0.35
CLK3-223ENST00000568488 CST4P01036 141 aa12.85□□□□□ -0.35
CLK3-223ENST00000568488 ACKR3P25106 362 aa12.85□□□□□ -0.35
CLK3-223ENST00000568488 GP2P55259 537 aaKnown RBP12.85□□□□□ -0.35
CLK3-223ENST00000568488 DLX6P56179 175 aa12.85□□□□□ -0.35
CLK3-223ENST00000568488 MINOS1Q5TGZ0 78 aa12.85□□□□□ -0.35
CLK3-223ENST00000568488 CBLL1Q75N03 491 aa12.85□□□□□ -0.35
CLK3-223ENST00000568488 OR2W3Q7Z3T1 314 aa12.85□□□□□ -0.35
CLK3-223ENST00000568488 SBSPONQ8IVN8 264 aa12.85□□□□□ -0.35
CLK3-223ENST00000568488 ZNF511Q8NB15 262 aa12.85□□□□□ -0.35
CLK3-223ENST00000568488 KLHL30-AS1Q8NEE0 82 aa12.85□□□□□ -0.35
CLK3-223ENST00000568488 OR2T4Q8NH00 348 aa12.85□□□□□ -0.35
CLK3-223ENST00000568488 P2RX4Q99571 388 aa12.85□□□□□ -0.35
CLK3-223ENST00000568488 MINOS1-NBL1R4GNA1 71 aa12.85□□□□□ -0.35
CLK3-223ENST00000568488 DHRS12A0PJE2 317 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 CXCR6O00574 342 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 GSTA4O15217 222 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 IDH3BO43837 385 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 SERPINA1P01009 418 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 NPPAP01160 153 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 APOC1P02654 83 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 ZNF728P0DKX0 622 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 IGHV1-8P0DP01 117 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 FMO3P31513 532 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 ACTA2P62736 377 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 ACTG2P63267 376 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 ACTC1P68032 377 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 ACTA1P68133 377 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 ACP7Q6ZNF0 438 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 FAM86B1Q8N7N1 296 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 ZNF488Q96MN9 340 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 PARD6BQ9BYG5 372 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 OR51I2Q9H344 312 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 TBC1D23Q9NUY8 699 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 RASL12Q9NYN1 266 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 NKX1-2Q9UD57 310 aaPredicted RBP12.84□□□□□ -0.35
CLK3-223ENST00000568488 OR14J1Q9UGF5 321 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 SMAD5-AS1Q9Y6J3 95 aa12.84□□□□□ -0.35
CLK3-223ENST00000568488 DIRAS1O95057 198 aa12.83□□□□□ -0.36
CLK3-223ENST00000568488 LY86O95711 162 aa12.83□□□□□ -0.36
CLK3-223ENST00000568488 TK1P04183 234 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms