RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 BCL6BQ8N143 479 aaPredicted RBP12.46□□□□□ -0.41
VPS39-210ENST00000568357 ACBD7Q8N6N7 88 aa12.46□□□□□ -0.41
VPS39-210ENST00000568357 ZNF418Q8TF45 676 aaPredicted RBP12.46□□□□□ -0.41
VPS39-210ENST00000568357 APH1BQ8WW43 257 aa12.46□□□□□ -0.41
VPS39-210ENST00000568357 AQP3Q92482 292 aa12.46□□□□□ -0.41
VPS39-210ENST00000568357 UPRTQ96BW1 309 aa12.46□□□□□ -0.41
VPS39-210ENST00000568357 C12orf43Q96C57 262 aaKnown RBP12.46□□□□□ -0.41
VPS39-210ENST00000568357 SMPD3Q9NY59 655 aaPredicted RBP12.46□□□□□ -0.41
VPS39-210ENST00000568357 ZNF69Q9UC07 566 aa12.46□□□□□ -0.41
VPS39-210ENST00000568357 NUP50Q9UKX7 468 aa12.46□□□□□ -0.41
VPS39-210ENST00000568357 MYRFQ9Y2G1 1151 aa12.46□□□□□ -0.41
VPS39-210ENST00000568357 SOX21Q9Y651 276 aaPredicted RBP12.46□□□□□ -0.41
VPS39-210ENST00000568357 WNK2Q9Y3S1 2297 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 A0A0A6YYJ9 748 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 A0A1B0GVI7 797 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 DHRS7CA6NNS2 312 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 SYT7O43581 403 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 IGHV4-38-2P0DP08 117 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 FPR2P25090 351 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 NANOS3P60323 173 aaKnown RBP12.45□□□□□ -0.42
VPS39-210ENST00000568357 FGF12P61328 243 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 ACTC1P68032 377 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 ACTA1P68133 377 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 TUSC1Q2TAM9 212 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 ARMCX4Q5H9R4 360 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 STUMQ69YW2 141 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 USP43Q70EL4 1123 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 BTN2A1Q7KYR7 527 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 FAM220AQ7Z4H9 259 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 LHFPL3Q86UP9 236 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 FAM216BQ8N7L0 139 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 OR2G2Q8NGZ5 317 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 ANGPTL6Q8NI99 470 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 ZNF671Q8TAW3 534 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 Q96MT0 163 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 ZNF649Q9BS31 505 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 FRRS1LQ9P0K9 344 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 DNAJB11Q9UBS4 358 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 PCDHGB1Q9Y5G3 927 aa12.45□□□□□ -0.42
VPS39-210ENST00000568357 PQLC2LA1A4F0 135 aa12.44□□□□□ -0.42
VPS39-210ENST00000568357 J3QLW9 94 aa12.44□□□□□ -0.42
VPS39-210ENST00000568357 SYNGR1O43759 233 aa12.44□□□□□ -0.42
VPS39-210ENST00000568357 ENSAO43768 121 aaKnown RBP12.44□□□□□ -0.42
VPS39-210ENST00000568357 WBP4O75554 376 aaKnown RBP12.44□□□□□ -0.42
VPS39-210ENST00000568357 CLIC3O95833 236 aa12.44□□□□□ -0.42
VPS39-210ENST00000568357 SELLP14151 372 aa12.44□□□□□ -0.42
VPS39-210ENST00000568357 ZNF19P17023 458 aa12.44□□□□□ -0.42
VPS39-210ENST00000568357 GLRA1P23415 457 aa12.44□□□□□ -0.42
VPS39-210ENST00000568357 HILS1P60008 231 aa12.44□□□□□ -0.42
VPS39-210ENST00000568357 RCN1Q15293 331 aa12.44□□□□□ -0.42
VPS39-210ENST00000568357 UBE2V2Q15819 145 aa12.44□□□□□ -0.42
VPS39-210ENST00000568357 FDX2Q6P4F2 183 aa12.44□□□□□ -0.42
VPS39-210ENST00000568357 ZNF788Q6ZQV5 615 aa12.44□□□□□ -0.42
VPS39-210ENST00000568357 SLC36A1Q7Z2H8 476 aa12.44□□□□□ -0.42
VPS39-210ENST00000568357 BPIFB2Q8N4F0 458 aa12.44□□□□□ -0.42
VPS39-210ENST00000568357 ST8SIA4Q92187 359 aa12.44□□□□□ -0.42
VPS39-210ENST00000568357 ZNF488Q96MN9 340 aa12.44□□□□□ -0.42
VPS39-210ENST00000568357 RDH12Q96NR8 316 aa12.44□□□□□ -0.42
VPS39-210ENST00000568357 ADI1Q9BV57 179 aa12.44□□□□□ -0.42
VPS39-210ENST00000568357 LOC107986453A0A1B0GWG9 222 aa12.43□□□□□ -0.42
VPS39-210ENST00000568357 ANKRD61A6NGH8 418 aa12.43□□□□□ -0.42
VPS39-210ENST00000568357 OR2AT4A6NND4 320 aa12.43□□□□□ -0.42
VPS39-210ENST00000568357 LIPFP07098 398 aa12.43□□□□□ -0.42
VPS39-210ENST00000568357 SFTPBP07988 381 aa12.43□□□□□ -0.42
VPS39-210ENST00000568357 PEX2P28328 305 aa12.43□□□□□ -0.42
VPS39-210ENST00000568357 HAAOP46952 286 aa12.43□□□□□ -0.42
VPS39-210ENST00000568357 IKZF1Q13422 519 aa12.43□□□□□ -0.42
VPS39-210ENST00000568357 GALEQ14376 348 aa12.43□□□□□ -0.42
VPS39-210ENST00000568357 SMN1Q16637 294 aaKnown RBP12.43□□□□□ -0.42
VPS39-210ENST00000568357 DGUOKQ16854 277 aa12.43□□□□□ -0.42
VPS39-210ENST00000568357 ANGPTL5Q86XS5 388 aa12.43□□□□□ -0.42
VPS39-210ENST00000568357 ZNF573Q86YE8 665 aa12.43□□□□□ -0.42
VPS39-210ENST00000568357 SIGLECL1Q8N7X8 197 aa12.43□□□□□ -0.42
VPS39-210ENST00000568357 ZNF555Q8NEP9 628 aa12.43□□□□□ -0.42
VPS39-210ENST00000568357 TMIGD2Q96BF3 282 aa12.43□□□□□ -0.42
VPS39-210ENST00000568357 PELI1Q96FA3 418 aa12.43□□□□□ -0.42
VPS39-210ENST00000568357 C4orf36Q96KX1 117 aa12.43□□□□□ -0.42
VPS39-210ENST00000568357 GAFA1Q96PS6 74 aa12.43□□□□□ -0.42
VPS39-210ENST00000568357 SUCNR1Q9BXA5 334 aa12.43□□□□□ -0.42
VPS39-210ENST00000568357 ISG20L2Q9H9L3 353 aaKnown RBP12.43□□□□□ -0.42
VPS39-210ENST00000568357 ESM1Q9NQ30 184 aa12.43□□□□□ -0.42
VPS39-210ENST00000568357 MRPS18AQ9NVS2 196 aaKnown RBP12.43□□□□□ -0.42
VPS39-210ENST00000568357 NLKQ9UBE8 527 aa12.43□□□□□ -0.42
VPS39-210ENST00000568357 IGKV1D-17A0A075B6S4 117 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 ZNF879B4DU55 563 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 NDUFB3O43676 98 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 FADS2O95864 444 aaKnown RBP12.42□□□□□ -0.42
VPS39-210ENST00000568357 ECDO95905 644 aaPredicted RBP12.42□□□□□ -0.42
VPS39-210ENST00000568357 PLATP00750 562 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 IGHA1P01876 353 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 ACAA1P09110 424 aaPredicted RBP12.42□□□□□ -0.42
VPS39-210ENST00000568357 UBCP0CG48 685 aaKnown RBP12.42□□□□□ -0.42
VPS39-210ENST00000568357 PSG2P11465 335 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 MMP9P14780 707 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 ARF6P62330 175 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 RAB40BQ12829 278 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 C11orf91Q3C1V1 193 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 CALHM1Q8IU99 346 aa12.42□□□□□ -0.42
VPS39-210ENST00000568357 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.42□□□□□ -0.42
VPS39-210ENST00000568357 ZDHHC22Q8N966 263 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms