RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 A0A0A6YYD4 124 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 C2orf72A6NCS6 295 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 LIPT2A6NK58 231 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 KLF7O75840 302 aaPredicted RBP11.65□□□□□ -0.54
VPS4A-204ENST00000566354 MPIG6BO95866 241 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 NPY4RP50391 375 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 TMEM230Q96A57 120 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 C1orf147Q96MC9 270 aaPredicted RBP11.65□□□□□ -0.54
VPS4A-204ENST00000566354 AQP10Q96PS8 301 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 SEC11CQ9BY50 192 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 TLNRD1Q9H1K6 362 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 WDR54Q9H977 334 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 SERINC1Q9NRX5 453 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 ALKBH4Q9NXW9 302 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 PTRH2Q9Y3E5 179 aaKnown RBP11.65□□□□□ -0.54
VPS4A-204ENST00000566354 FLVCR1Q9Y5Y0 555 aa11.65□□□□□ -0.54
VPS4A-204ENST00000566354 A0A1W2PNV4 684 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 C9J4A7 227 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 ZNF878C9JN71 531 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 TM4SF5O14894 197 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 SOCS1O15524 211 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 CDC14BO60729 498 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 CRYABP02511 175 aaKnown RBP11.64□□□□□ -0.55
VPS4A-204ENST00000566354 UMODP07911 640 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 FPR2P25090 351 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 PTAFRP25105 342 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 PJVKQ0ZLH3 352 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 CLN3Q13286 438 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 EIF3IQ13347 325 aaKnown RBP11.64□□□□□ -0.55
VPS4A-204ENST00000566354 PLEKHN1Q494U1 663 aaPredicted RBP11.64□□□□□ -0.55
VPS4A-204ENST00000566354 ZNF585AQ6P3V2 769 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 TMPPEQ6ZT21 453 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 PEG10Q86TG7 708 aaKnown RBP11.64□□□□□ -0.55
VPS4A-204ENST00000566354 RTN4RL2Q86UN3 420 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 OR5AS1Q8N127 324 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 OR56B1Q8NGI3 324 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 OR2AJ1Q8NGZ0 328 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 NUBPLQ8TB37 319 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 SAT2Q96F10 170 aaPredicted RBP11.64□□□□□ -0.55
VPS4A-204ENST00000566354 WDR77Q9BQA1 342 aaPredicted RBP11.64□□□□□ -0.55
VPS4A-204ENST00000566354 TMEM59Q9BXS4 323 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 SPRY4Q9C004 299 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 LPAR3Q9UBY5 353 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 VDAC3Q9Y277 283 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 ZNF705EA8MWA4 302 aaPredicted RBP11.64□□□□□ -0.55
VPS4A-204ENST00000566354 DLL1O00548 723 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 SLC31A2O15432 143 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 ADAP1O75689 374 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 ABOP16442 354 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 TMEM50BP56557 158 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 FBXW4P57775 412 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 NHLH1Q02575 133 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 SLC9A3R2Q15599 337 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 SSX2Q16385 188 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 C6orf15Q6UXA7 325 aaPredicted RBP11.64□□□□□ -0.55
VPS4A-204ENST00000566354 OR4A4PQ8NGN8 299 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 OR5H2Q8NGV7 314 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 SPACA5Q96QH8 159 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 TREM1Q9NP99 234 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 UQCC1Q9NVA1 299 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 DNAJB11Q9UBS4 358 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 NXT1Q9UKK6 140 aaKnown RBP11.64□□□□□ -0.55
VPS4A-204ENST00000566354 PADI1Q9ULC6 663 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 LHFPL6Q9Y693 200 aa11.64□□□□□ -0.55
VPS4A-204ENST00000566354 TNFSF15O95150 251 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 PTBP3O95758 552 aaKnown RBP11.63□□□□□ -0.55
VPS4A-204ENST00000566354 PET100P0DJ07 73 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 TMEM11P17152 192 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 RPS18P62269 152 aaKnown RBP11.63□□□□□ -0.55
VPS4A-204ENST00000566354 EIF5AP63241 154 aaKnown RBP11.63□□□□□ -0.55
VPS4A-204ENST00000566354 SRSF3P84103 164 aaKnown RBP11.63□□□□□ -0.55
VPS4A-204ENST00000566354 FOXF1Q12946 379 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 RNF212Q495C1 297 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 RNF144BQ7Z419 303 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 ABHD12BQ7Z5M8 362 aaPredicted RBP11.63□□□□□ -0.55
VPS4A-204ENST00000566354 CPEB2Q7Z5Q1 589 aaKnown RBP11.63□□□□□ -0.55
VPS4A-204ENST00000566354 COMMD2Q86X83 199 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 CBLN2Q8IUK8 224 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 NFAM1Q8NET5 270 aaPredicted RBP11.63□□□□□ -0.55
VPS4A-204ENST00000566354 ROBO4Q8WZ75 1007 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 NEU1Q99519 415 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 RTBDNQ9BSG5 229 aaPredicted RBP11.63□□□□□ -0.55
VPS4A-204ENST00000566354 URM1Q9BTM9 101 aaKnown RBP11.63□□□□□ -0.55
VPS4A-204ENST00000566354 B3GAT1Q9P2W7 334 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 POLR1DQ9Y2S0 133 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 PTPRBP23467 1997 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 MSGN1A6NI15 193 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 H3BML4 177 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 ETV2O00321 342 aaPredicted RBP11.63□□□□□ -0.55
VPS4A-204ENST00000566354 MFNGO00587 321 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 TCN2P20062 427 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 OR3A4PP47883 348 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 NOVA1P51513 510 aaKnown RBP11.63□□□□□ -0.55
VPS4A-204ENST00000566354 CLRN1P58418 232 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 SUPT4H1P63272 117 aaKnown RBP11.63□□□□□ -0.55
VPS4A-204ENST00000566354 MST1LQ2TV78 715 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 EIF5AL1Q6IS14 154 aaKnown RBP11.63□□□□□ -0.55
VPS4A-204ENST00000566354 C16orf47Q6ZP98 133 aaPredicted RBP11.63□□□□□ -0.55
VPS4A-204ENST00000566354 LHFPL1Q86WI0 220 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 APCDD1LQ8NCL9 501 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms