RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 URM1Q9BTM9 101 aaKnown RBP11.81□□□□□ -0.52
CLK3-215ENST00000564353 ULBP2Q9BZM5 246 aa11.81□□□□□ -0.52
CLK3-215ENST00000564353 GPR179Q6PRD1 2367 aa11.8□□□□□ -0.52
CLK3-215ENST00000564353 C3orf80F5H4A9 247 aa11.8□□□□□ -0.52
CLK3-215ENST00000564353 M0R135 149 aa11.8□□□□□ -0.52
CLK3-215ENST00000564353 SGCEO43556 437 aa11.8□□□□□ -0.52
CLK3-215ENST00000564353 FBXO24O75426 580 aa11.8□□□□□ -0.52
CLK3-215ENST00000564353 CHRM2P08172 466 aa11.8□□□□□ -0.52
CLK3-215ENST00000564353 NOVA1P51513 510 aaKnown RBP11.8□□□□□ -0.52
CLK3-215ENST00000564353 ZNF774Q6NX45 483 aa11.8□□□□□ -0.52
CLK3-215ENST00000564353 LPCAT3Q6P1A2 487 aa11.8□□□□□ -0.52
CLK3-215ENST00000564353 CBLN2Q8IUK8 224 aa11.8□□□□□ -0.52
CLK3-215ENST00000564353 PIK3IP1Q96FE7 263 aa11.8□□□□□ -0.52
CLK3-215ENST00000564353 ZNF799Q96GE5 643 aa11.8□□□□□ -0.52
CLK3-215ENST00000564353 CDX2Q99626 313 aaPredicted RBP11.8□□□□□ -0.52
CLK3-215ENST00000564353 CDC6Q99741 560 aa11.8□□□□□ -0.52
CLK3-215ENST00000564353 PECRQ9BY49 303 aa11.8□□□□□ -0.52
CLK3-215ENST00000564353 PLEKHJ1Q9NW61 149 aa11.8□□□□□ -0.52
CLK3-215ENST00000564353 ABCD4O14678 606 aa11.8□□□□□ -0.52
CLK3-215ENST00000564353 TRAPPC6AO75865 159 aa11.8□□□□□ -0.52
CLK3-215ENST00000564353 MTCP1P56278 107 aa11.8□□□□□ -0.52
CLK3-215ENST00000564353 SLC35A1P78382 337 aa11.8□□□□□ -0.52
CLK3-215ENST00000564353 FLI1Q01543 452 aaPredicted RBP11.8□□□□□ -0.52
CLK3-215ENST00000564353 OR2A2Q6IF42 318 aa11.8□□□□□ -0.52
CLK3-215ENST00000564353 ZNF2Q9BSG1 426 aaPredicted RBP11.8□□□□□ -0.52
CLK3-215ENST00000564353 FAM117AQ9C073 453 aa11.8□□□□□ -0.52
CLK3-215ENST00000564353 MYOZ1Q9NP98 299 aaPredicted RBP11.8□□□□□ -0.52
CLK3-215ENST00000564353 MED9Q9NWA0 146 aa11.8□□□□□ -0.52
CLK3-215ENST00000564353 C19orf25Q9UFG5 118 aaPredicted RBP11.8□□□□□ -0.52
CLK3-215ENST00000564353 COL5A1P20908 1838 aaPredicted RBP11.8□□□□□ -0.52
CLK3-215ENST00000564353 NCOR1O75376 2440 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 NPIPB13A6NJU9 1138 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 NPIPB4C9JG80 1138 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 DNASE2O00115 360 aaPredicted RBP11.79□□□□□ -0.52
CLK3-215ENST00000564353 TP53I11O14683 189 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 TLX3O43711 291 aaPredicted RBP11.79□□□□□ -0.52
CLK3-215ENST00000564353 ZIC3O60481 467 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 SERPINA5P05154 406 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 CD63P08962 238 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 ADCYAP1P18509 176 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 MRPL14Q6P1L8 145 aaKnown RBP11.79□□□□□ -0.52
CLK3-215ENST00000564353 DBX2Q6ZNG2 339 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 TSNAXQ99598 290 aaKnown RBP11.79□□□□□ -0.52
CLK3-215ENST00000564353 PIGQQ9BRB3 760 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 PROK2Q9HC23 129 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 CRLF2Q9HC73 371 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 TREM1Q9NP99 234 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 HS3ST3B1Q9Y662 390 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 DBX1A6NMT0 343 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 ZNF705EA8MWA4 302 aaPredicted RBP11.79□□□□□ -0.52
CLK3-215ENST00000564353 SFT2D2O95562 160 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 OTX2P32243 289 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 ZNF345Q14585 488 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 SLC25A53Q5H9E4 307 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 OR9K2Q8NGE7 335 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 NELFAQ9H3P2 528 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 LDAHQ9H6V9 325 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 WNT16Q9UBV4 365 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 EXPH5Q8NEV8 1989 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 NBEAQ8NFP9 2946 aa11.79□□□□□ -0.52
CLK3-215ENST00000564353 MSTNO14793 375 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 DHHO43323 396 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 FARS2O95363 451 aaKnown RBP11.78□□□□□ -0.52
CLK3-215ENST00000564353 LCATP04180 440 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 RFPL3SP0C7P2 107 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 NME2P22392 152 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 RELQ04864 619 aaPredicted RBP11.78□□□□□ -0.52
CLK3-215ENST00000564353 HIST3H3Q16695 136 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 PIGYQ3MUY2 71 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 FADS6Q8N9I5 356 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 GJC3Q8NFK1 279 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 SEMA6DQ8NFY4 1073 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 NABP1Q96AH0 204 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 LIME1Q9H400 295 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 GSN-AS1Q9NRJ2 163 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 ADAMTS20P59510 1910 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 CCDC187A0A096LP49 1063 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 IGHV1-45A0A0A0MS14 117 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 A0A1B0GV50 99 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 SLC33A1O00400 549 aaPredicted RBP11.78□□□□□ -0.52
CLK3-215ENST00000564353 DKK1O94907 266 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 GSTP1P09211 210 aaKnown RBP11.78□□□□□ -0.52
CLK3-215ENST00000564353 CCNOP22674 350 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 PTGER4P35408 488 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 TSPAN7P41732 249 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 GRB2P62993 217 aaKnown RBP11.78□□□□□ -0.52
CLK3-215ENST00000564353 RPL7L1Q6DKI1 246 aaKnown RBP11.78□□□□□ -0.52
CLK3-215ENST00000564353 SLC23A3Q6PIS1 610 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 PUSL1Q8N0Z8 303 aaKnown RBP11.78□□□□□ -0.52
CLK3-215ENST00000564353 FGFBP3Q8TAT2 258 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 REEP6Q96HR9 211 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 SHDQ96IW2 340 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 GPHA2Q96T91 129 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 NKX6-2Q9C056 277 aaPredicted RBP11.78□□□□□ -0.52
CLK3-215ENST00000564353 PCED1AQ9H1Q7 454 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 MOB1AQ9H8S9 216 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 CYTL1Q9NRR1 136 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 ZNF107Q9UII5 783 aaPredicted RBP11.78□□□□□ -0.52
CLK3-215ENST00000564353 HDGFL3Q9Y3E1 203 aa11.78□□□□□ -0.52
CLK3-215ENST00000564353 LSM5Q9Y4Y9 91 aaKnown RBP11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms