RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 EML5Q05BV3 1969 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 EML6Q6ZMW3 1958 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 SMAD7O15105 426 aaKnown RBP4.72□□□□□ -1.65
VPS13C-209ENST00000560637 ENSAO43768 121 aaKnown RBP4.72□□□□□ -1.65
VPS13C-209ENST00000560637 DHFRP00374 187 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 SFTPBP07988 381 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 IFI6P09912 130 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 EPXP11678 715 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 ELK1P19419 428 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 EPHA1P21709 976 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 CBX5P45973 191 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 RFX2P48378 723 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 ALDH3B2P48448 385 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 AP3S2P59780 193 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 HOXA4Q00056 320 aaPredicted RBP4.72□□□□□ -1.65
VPS13C-209ENST00000560637 TNK1Q13470 666 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 ENDOGQ14249 297 aaKnown RBP4.72□□□□□ -1.65
VPS13C-209ENST00000560637 C6orf201Q7Z4U5 140 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 LRRTM1Q86UE6 522 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 OR4S1Q8NGB4 309 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 OR10V1Q8NGI7 309 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 OR6M1Q8NGM8 313 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 KCNG3Q8TAE7 436 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 OIT3Q8WWZ8 545 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 SGK3Q96BR1 496 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 STARD4Q96DR4 205 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 SFXN3Q9BWM7 321 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 CACNG6Q9BXT2 260 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 SLC5A7Q9GZV3 580 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 PPP1R3EQ9H7J1 279 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 CNTD2Q9H8S5 307 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 SLC23A1Q9UHI7 598 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 SESN1Q9Y6P5 492 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 HIVEP2P31629 2446 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 IFITM5A6NNB3 132 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 ADAM20O43506 726 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 IL1AP01583 271 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 CPN1P15169 458 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 GABRB1P18505 474 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 CDK2P24941 298 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 GNG3P63215 75 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 CD83Q01151 205 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 BAMBIQ13145 260 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 BCL2A1Q16548 175 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 GDPGP1Q6ZNW5 385 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 PRSS35Q8N3Z0 413 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 PAQR4Q8N4S7 273 aaPredicted RBP4.72□□□□□ -1.65
VPS13C-209ENST00000560637 PPP1R35Q8TAP8 253 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 ITLN1Q8WWA0 313 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 COL12A1Q99715 3063 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 AUNIPQ9H7T9 357 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF275Q9NSD4 429 aaPredicted RBP4.72□□□□□ -1.65
VPS13C-209ENST00000560637 RBFOX1Q9NWB1 397 aaKnown RBP4.72□□□□□ -1.65
VPS13C-209ENST00000560637 GFOD1Q9NXC2 390 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 STEAP1Q9UHE8 339 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 GMEB1Q9Y692 573 aa4.72□□□□□ -1.65
VPS13C-209ENST00000560637 TNRC6AQ8NDV7 1962 aaKnown RBP4.72□□□□□ -1.65
VPS13C-209ENST00000560637 A0A1B0GUH1 482 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF736B4DX44 427 aaPredicted RBP4.71□□□□□ -1.65
VPS13C-209ENST00000560637 GMDSO60547 372 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 ONECUT2O95948 504 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 EIF4EP06730 217 aaKnown RBP4.71□□□□□ -1.65
VPS13C-209ENST00000560637 CPT2P23786 658 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 COX7A1P24310 79 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 GIFP27352 417 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 S100A10P60903 97 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 DGCR2P98153 550 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 HES1Q14469 280 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 PLGLAQ15195 96 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 HFEQ30201 348 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 PIGYQ3MUY2 71 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 CCDC58Q4VC31 144 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 PHLDA2Q53GA4 152 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 OR52W1Q6IF63 320 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF474Q6S9Z5 364 aaPredicted RBP4.71□□□□□ -1.65
VPS13C-209ENST00000560637 LRP11Q86VZ4 500 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF573Q86YE8 665 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 ELMOD2Q8IZ81 293 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 CMTM4Q8IZR5 234 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 PARP16Q8N5Y8 322 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 LRRC75AQ8NAA5 344 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 KLF14Q8TD94 323 aaPredicted RBP4.71□□□□□ -1.65
VPS13C-209ENST00000560637 HPS1Q92902 700 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 SCMH1Q96GD3 660 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 TIMD4Q96H15 378 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 WFIKKN1Q96NZ8 548 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 OR2V2Q96R30 315 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 GPX7Q96SL4 187 aaPredicted RBP4.71□□□□□ -1.65
VPS13C-209ENST00000560637 THAP7Q9BT49 309 aaPredicted RBP4.71□□□□□ -1.65
VPS13C-209ENST00000560637 FAAP24Q9BTP7 215 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 TMPRSS13Q9BYE2 586 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 RNF122Q9H9V4 155 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 CA10Q9NS85 328 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 NUDT15Q9NV35 164 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 KLK11Q9UBX7 282 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 EXOGQ9Y2C4 368 aaKnown RBP4.71□□□□□ -1.65
VPS13C-209ENST00000560637 DMDP11532 3685 aa4.71□□□□□ -1.65
VPS13C-209ENST00000560637 PRSS47A8MTI9 375 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 TNFSF12O43508 249 aa4.71□□□□□ -1.66
VPS13C-209ENST00000560637 CYB5R3P00387 301 aaPredicted RBP4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms