RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 OR1M1Q8NGA1 313 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 OR14K1Q8NGZ2 314 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 OR2G2Q8NGZ5 317 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 OR51F2Q8NH61 342 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 PIGCQ92535 297 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 SGCDQ92629 289 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 YIPF6Q96EC8 236 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 PELI1Q96FA3 418 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 C4orf36Q96KX1 117 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 RTL8AQ9BWD3 113 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 TLNRD1Q9H1K6 362 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 LPAR2Q9HBW0 351 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 TMEM165Q9HC07 324 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 ERVK13-1Q9NX77 482 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 KCNS2Q9ULS6 477 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 PIGLQ9Y2B2 252 aa7.85□□□□□ -1.15
LDLR-211ENST00000560173 PPIAL4EA0A075B759 164 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 A0A1B0GVI7 797 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 LOC107986453A0A1B0GWG9 222 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 TMEM210A6NLX4 147 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 CEACAM18A8MTB9 384 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 PPIAL4DF5H284 164 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 J3QLW9 94 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 LGALS8O00214 317 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 CCRL2O00421 344 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 CRLF1O75462 422 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 UBCP0CG48 685 aaKnown RBP7.84□□□□□ -1.15
LDLR-211ENST00000560173 LIMS3P0CW19 117 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 LIMS4P0CW20 117 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 PPIAL4FP0DN26 164 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 CD36P16671 472 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 ZNF19P17023 458 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 CD80P33681 288 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 MAP2K4P45985 399 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 WNT4P56705 351 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 NANOS3P60323 173 aaKnown RBP7.84□□□□□ -1.15
LDLR-211ENST00000560173 MLLT11Q13015 90 aaPredicted RBP7.84□□□□□ -1.15
LDLR-211ENST00000560173 MED22Q15528 200 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 ODF4Q2M2E3 257 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 ZNF404Q494X3 552 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 ARMCX4Q5H9R4 360 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 FAM76BQ5HYJ3 339 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 TMEM42Q69YG0 159 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 TMPRSS11AQ6ZMR5 421 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 GLCCI1Q86VQ1 547 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 KLHL36Q8N4N3 616 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 GCSAMQ8N6F7 178 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 NANOGP1Q8N7R0 232 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 HAVCR2Q8TDQ0 301 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 TMEM186Q96B77 213 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 RNF170Q96K19 258 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 MGLLQ99685 303 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 TMEM246Q9BRR3 403 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 ISG20L2Q9H9L3 353 aaKnown RBP7.84□□□□□ -1.15
LDLR-211ENST00000560173 PATZ1Q9HBE1 687 aaKnown RBP7.84□□□□□ -1.15
LDLR-211ENST00000560173 PPIAL4AQ9Y536 164 aa7.84□□□□□ -1.15
LDLR-211ENST00000560173 TRAV20A0A0B4J274 112 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 hCG_1807616A0A1W2PRN6 198 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 OR5B21A6NL26 309 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 OR4C45A6NMZ5 311 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 CDIPTO14735 213 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 SYT7O43581 403 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 PLPP2O43688 288 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 AIREO43918 545 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 LHBP01229 141 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 EGR1P18146 543 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 PSMA1P25786 263 aaKnown RBP7.83□□□□□ -1.16
LDLR-211ENST00000560173 ZFP36P26651 326 aaKnown RBP7.83□□□□□ -1.16
LDLR-211ENST00000560173 CFHR2P36980 270 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 CCR9P51686 369 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 SEC61A1P61619 476 aaKnown RBP7.83□□□□□ -1.16
LDLR-211ENST00000560173 GNG3P63215 75 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 BDH1Q02338 343 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 DGUOKQ16854 277 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 CR1LQ2VPA4 569 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 CEACAM21Q3KPI0 293 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 CEP78Q5JTW2 689 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 CLVS2Q5SYC1 327 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 PLCXD3Q63HM9 321 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 WDR82Q6UXN9 313 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 USP43Q70EL4 1123 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 MOB3CQ70IA8 216 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 RDH10Q8IZV5 341 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 BOLLQ8N9W6 283 aaKnown RBP7.83□□□□□ -1.16
LDLR-211ENST00000560173 C19orf18Q8NEA5 215 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 CCDC54Q8NEL0 328 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 DEFB108BQ8NET1 73 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 OR52N1Q8NH53 320 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 LRRC29Q8WV35 223 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 RPL3LQ92901 407 aaKnown RBP7.83□□□□□ -1.16
LDLR-211ENST00000560173 HIST1H2AAQ96QV6 131 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 OR51I2Q9H344 312 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 METTL17Q9H7H0 456 aaPredicted RBP7.83□□□□□ -1.16
LDLR-211ENST00000560173 GPR173Q9NS66 373 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 HIF1ANQ9NWT6 349 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 FRRS1LQ9P0K9 344 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 CDC42EP3Q9UKI2 254 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 PCDHB10Q9UN67 800 aa7.83□□□□□ -1.16
LDLR-211ENST00000560173 CAB39Q9Y376 341 aaPredicted RBP7.83□□□□□ -1.16
LDLR-211ENST00000560173 ANKRD61A6NGH8 418 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms