RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 OR2V2Q96R30 315 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 CNN2Q99439 309 aaKnown RBP7.35□□□□□ -1.23
USP3-208ENST00000558285 DDOQ99489 341 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 ZNF665Q9H7R5 613 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 TMEM106BQ9NUM4 274 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 MED9Q9NWA0 146 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 IMPAD1Q9NX62 359 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 PGPEP1Q9NXJ5 209 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 TMEFF2Q9UIK5 374 aaPredicted RBP7.35□□□□□ -1.23
USP3-208ENST00000558285 NPTNQ9Y639 398 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 ARFGEF3Q5TH69 2177 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 LRP5LA4QPB2 252 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 PTGES3LE9PB15 166 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 ST8SIA5O15466 376 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 FBXO24O75426 580 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 RP2O75695 350 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 NCR1O76036 304 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 FSTL3O95633 263 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 GPANK1O95872 356 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 ECDO95905 644 aaPredicted RBP7.35□□□□□ -1.23
USP3-208ENST00000558285 GYPBP06028 91 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 HOXB4P17483 251 aaPredicted RBP7.35□□□□□ -1.23
USP3-208ENST00000558285 RFX2P48378 723 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 PRKXP51817 358 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 POLR2GP62487 172 aaKnown RBP eCLIP7.35□□□□□ -1.23
USP3-208ENST00000558285 IL5RAQ01344 420 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 GK2Q14410 553 aaPredicted RBP7.35□□□□□ -1.23
USP3-208ENST00000558285 PTGES3Q15185 160 aaKnown RBP7.35□□□□□ -1.23
USP3-208ENST00000558285 GRK1Q15835 563 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 KRTAP27-1Q3LI81 207 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 ZNF600Q6ZNG1 722 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 OR5AS1Q8N127 324 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 OR4M1Q8NGD0 313 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 OTOSQ8NHW6 89 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 RNF133Q8WVZ7 376 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 TMEM186Q96B77 213 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 C1orf159Q96HA4 380 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 SDHCQ99643 169 aaPredicted RBP7.35□□□□□ -1.23
USP3-208ENST00000558285 ABHD6Q9BV23 337 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 IFT46Q9NQC8 304 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 PLCXD1Q9NUJ7 323 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 WIPI2Q9Y4P8 454 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 SESN1Q9Y6P5 492 aa7.35□□□□□ -1.23
USP3-208ENST00000558285 CSMD2Q7Z408 3487 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 ZNF98A6NK75 572 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 FAM183AA6NL82 134 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 CD300LBA8K4G0 201 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 KRBOX1C9JBD0 128 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 LYNX1G3V0Z9 82 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 MPZL2O60487 215 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 SNAPINO95295 136 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 MT-ND2P03891 347 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 LYNX1P0DP58 116 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 RRASP10301 218 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 PRKACGP22612 351 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 OTX1P32242 354 aaPredicted RBP7.34□□□□□ -1.23
USP3-208ENST00000558285 DCTDP32321 178 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 NAA10P41227 235 aaPredicted RBP7.34□□□□□ -1.23
USP3-208ENST00000558285 LSM3P62310 102 aaKnown RBP7.34□□□□□ -1.23
USP3-208ENST00000558285 BTG1P62324 171 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 MRPL28Q13084 256 aaKnown RBP7.34□□□□□ -1.23
USP3-208ENST00000558285 HLXQ14774 488 aaPredicted RBP7.34□□□□□ -1.23
USP3-208ENST00000558285 AANATQ16613 207 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 C4orf46Q504U0 113 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 GDPGP1Q6ZNW5 385 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 CDH26Q8IXH8 852 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 OR8H2Q8N162 312 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 YIPF7Q8N8F6 280 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 BHLHE23Q8NDY6 225 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 CLDND2Q8NHS1 167 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 MYDGFQ969H8 173 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 YIPF5Q969M3 257 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 ZMYND19Q96E35 227 aaPredicted RBP7.34□□□□□ -1.23
USP3-208ENST00000558285 MICU1Q9BPX6 476 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 ADAT1Q9BUB4 502 aaKnown RBP7.34□□□□□ -1.23
USP3-208ENST00000558285 RANBP3Q9H6Z4 567 aaPredicted RBP7.34□□□□□ -1.23
USP3-208ENST00000558285 MOB1AQ9H8S9 216 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 PNRC2Q9NPJ4 139 aaKnown RBP7.34□□□□□ -1.23
USP3-208ENST00000558285 DCAF16Q9NXF7 216 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 ERVK-18Q9QC07 812 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 MIOXQ9UGB7 285 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 OR5V1Q9UGF6 321 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 NUFIP1Q9UHK0 495 aaKnown RBP7.34□□□□□ -1.23
USP3-208ENST00000558285 PFDN2Q9UHV9 154 aa7.34□□□□□ -1.23
USP3-208ENST00000558285 ZNF670-ZNF695F2Z2N8 137 aa7.33□□□□□ -1.24
USP3-208ENST00000558285 H3BUI4 141 aa7.33□□□□□ -1.24
USP3-208ENST00000558285 TSPAN4O14817 238 aa7.33□□□□□ -1.24
USP3-208ENST00000558285 SBK2P0C263 348 aa7.33□□□□□ -1.24
USP3-208ENST00000558285 PTBP1P26599 531 aaKnown RBP eCLIP7.33□□□□□ -1.24
USP3-208ENST00000558285 CD200P41217 278 aa7.33□□□□□ -1.24
USP3-208ENST00000558285 GATA4P43694 442 aa7.33□□□□□ -1.24
USP3-208ENST00000558285 HAAOP46952 286 aa7.33□□□□□ -1.24
USP3-208ENST00000558285 RIDAP52758 137 aaKnown RBP7.33□□□□□ -1.24
USP3-208ENST00000558285 RAB14P61106 215 aa7.33□□□□□ -1.24
USP3-208ENST00000558285 SSTP61278 116 aa7.33□□□□□ -1.24
USP3-208ENST00000558285 CR1LQ2VPA4 569 aa7.33□□□□□ -1.24
USP3-208ENST00000558285 FAM120AOSQ5T036 256 aa7.33□□□□□ -1.24
USP3-208ENST00000558285 AVPI1Q5T686 147 aa7.33□□□□□ -1.24
USP3-208ENST00000558285 MEDAGQ5VYS4 303 aa7.33□□□□□ -1.24
USP3-208ENST00000558285 KDM4DQ6B0I6 523 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms