RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 DVL1P1P54792 670 aaPredicted RBP11.38□□□□□ -0.59
SHMT2-228ENST00000557302 HOXA4Q00056 320 aaPredicted RBP11.38□□□□□ -0.59
SHMT2-228ENST00000557302 CDK5R1Q15078 307 aa11.38□□□□□ -0.59
SHMT2-228ENST00000557302 SFRP4Q6FHJ7 346 aaPredicted RBP11.38□□□□□ -0.59
SHMT2-228ENST00000557302 XAF1Q6GPH4 301 aa11.38□□□□□ -0.59
SHMT2-228ENST00000557302 HAGHLQ6PII5 290 aaPredicted RBP11.38□□□□□ -0.59
SHMT2-228ENST00000557302 DCDC5Q6ZRR9 648 aa11.38□□□□□ -0.59
SHMT2-228ENST00000557302 GLCCI1Q86VQ1 547 aa11.38□□□□□ -0.59
SHMT2-228ENST00000557302 ZNF573Q86YE8 665 aa11.38□□□□□ -0.59
SHMT2-228ENST00000557302 C19orf18Q8NEA5 215 aa11.38□□□□□ -0.59
SHMT2-228ENST00000557302 FGGYQ96C11 551 aa11.38□□□□□ -0.59
SHMT2-228ENST00000557302 ADAT3Q96EY9 351 aaPredicted RBP11.38□□□□□ -0.59
SHMT2-228ENST00000557302 CNBD2Q96M20 576 aa11.38□□□□□ -0.59
SHMT2-228ENST00000557302 ZNF184Q99676 751 aaPredicted RBP11.38□□□□□ -0.59
SHMT2-228ENST00000557302 MIOXQ9UGB7 285 aa11.38□□□□□ -0.59
SHMT2-228ENST00000557302 ERGIC3Q9Y282 383 aa11.38□□□□□ -0.59
SHMT2-228ENST00000557302 TPRKBQ9Y3C4 175 aa11.38□□□□□ -0.59
SHMT2-228ENST00000557302 MALRD1Q5VYJ5 2156 aa11.37□□□□□ -0.59
SHMT2-228ENST00000557302 TRAV20A0A0B4J274 112 aa11.37□□□□□ -0.59
SHMT2-228ENST00000557302 PQLC2LA1A4F0 135 aa11.37□□□□□ -0.59
SHMT2-228ENST00000557302 SRRM5B3KS81 715 aa11.37□□□□□ -0.59
SHMT2-228ENST00000557302 F5H0A9 414 aaPredicted RBP11.37□□□□□ -0.59
SHMT2-228ENST00000557302 PLPP2O43688 288 aa11.37□□□□□ -0.59
SHMT2-228ENST00000557302 CDK1P06493 297 aa11.37□□□□□ -0.59
SHMT2-228ENST00000557302 PCMT1P22061 227 aa11.37□□□□□ -0.59
SHMT2-228ENST00000557302 CNN3Q15417 329 aaKnown RBP11.37□□□□□ -0.59
SHMT2-228ENST00000557302 UBE2V2Q15819 145 aa11.37□□□□□ -0.59
SHMT2-228ENST00000557302 MICBQ29980 383 aa11.37□□□□□ -0.59
SHMT2-228ENST00000557302 ESCO2Q56NI9 601 aa11.37□□□□□ -0.59
SHMT2-228ENST00000557302 NLRC3Q7RTR2 1065 aa11.37□□□□□ -0.59
SHMT2-228ENST00000557302 ZNF485Q8NCK3 441 aa11.37□□□□□ -0.59
SHMT2-228ENST00000557302 OR51A4Q8NGJ6 313 aa11.37□□□□□ -0.59
SHMT2-228ENST00000557302 ZNF671Q8TAW3 534 aa11.37□□□□□ -0.59
SHMT2-228ENST00000557302 TRMT10AQ8TBZ6 339 aaKnown RBP11.37□□□□□ -0.59
SHMT2-228ENST00000557302 NPRL2Q8WTW4 380 aa11.37□□□□□ -0.59
SHMT2-228ENST00000557302 TSEN15Q8WW01 171 aaKnown RBP11.37□□□□□ -0.59
SHMT2-228ENST00000557302 TMEM186Q96B77 213 aa11.37□□□□□ -0.59
SHMT2-228ENST00000557302 Q9H521 79 aa11.37□□□□□ -0.59
SHMT2-228ENST00000557302 HIF1ANQ9NWT6 349 aa11.37□□□□□ -0.59
SHMT2-228ENST00000557302 DHDHQ9UQ10 334 aa11.37□□□□□ -0.59
SHMT2-228ENST00000557302 LRCH1Q9Y2L9 728 aa11.37□□□□□ -0.59
SHMT2-228ENST00000557302 ANK3Q12955 4377 aaKnown RBP11.36□□□□□ -0.59
SHMT2-228ENST00000557302 IGHV3OR15-7A0A075B7D8 119 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 FAM230AA0A1W2PPH8 454 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 J3QT63 122 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 OGG1O15527 345 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 NDUFA2O43678 99 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 FOXH1O75593 365 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 LALBAP00709 142 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 WNT2P09544 360 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 MUC1P15941 1255 aaPredicted RBP11.36□□□□□ -0.59
SHMT2-228ENST00000557302 HAAOP46952 286 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 FUT6P51993 359 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 WNT4P56705 351 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 TAS2R43P59537 309 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 GMFBP60983 142 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 SLC35A2P78381 396 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 RNLSQ5VYX0 342 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 TEX36Q5VZQ5 186 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 UTS2BQ765I0 119 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 NANOGP1Q8N7R0 232 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 OR8B3Q8NGG8 313 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 RPS4Y2Q8TD47 263 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 AQP3Q92482 292 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 SMIM19Q96E16 107 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 NEIL1Q96FI4 390 aaPredicted RBP11.36□□□□□ -0.59
SHMT2-228ENST00000557302 POM121Q96HA1 1249 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 OR8B2Q96RD0 313 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 MND1Q9BWT6 205 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 PAK1IP1Q9NWT1 392 aaPredicted RBP11.36□□□□□ -0.59
SHMT2-228ENST00000557302 TMEM160Q9NX00 188 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 POLDIP2Q9Y2S7 368 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 PCDHGB5Q9Y5G0 923 aa11.36□□□□□ -0.59
SHMT2-228ENST00000557302 SIRT4Q9Y6E7 314 aaPredicted RBP11.36□□□□□ -0.59
SHMT2-228ENST00000557302 A8MXK9 166 aa11.35□□□□□ -0.59
SHMT2-228ENST00000557302 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.35□□□□□ -0.59
SHMT2-228ENST00000557302 AKR7A2O43488 359 aa11.35□□□□□ -0.59
SHMT2-228ENST00000557302 RHBDL1O75783 438 aa11.35□□□□□ -0.59
SHMT2-228ENST00000557302 GYPAP02724 150 aa11.35□□□□□ -0.59
SHMT2-228ENST00000557302 OCM2P0CE71 109 aa11.35□□□□□ -0.59
SHMT2-228ENST00000557302 OCMP0CE72 109 aaPredicted RBP11.35□□□□□ -0.59
SHMT2-228ENST00000557302 ATF1P18846 271 aa11.35□□□□□ -0.59
SHMT2-228ENST00000557302 PRKACBP22694 351 aa11.35□□□□□ -0.59
SHMT2-228ENST00000557302 ZFP36P26651 326 aaKnown RBP11.35□□□□□ -0.59
SHMT2-228ENST00000557302 PITPNBP48739 271 aa11.35□□□□□ -0.59
SHMT2-228ENST00000557302 SEC61A1P61619 476 aaKnown RBP11.35□□□□□ -0.59
SHMT2-228ENST00000557302 LCN2P80188 198 aa11.35□□□□□ -0.59
SHMT2-228ENST00000557302 DMKNQ6E0U4 476 aaPredicted RBP11.35□□□□□ -0.59
SHMT2-228ENST00000557302 LYPD2Q6UXB3 125 aa11.35□□□□□ -0.59
SHMT2-228ENST00000557302 FAM90A1Q86YD7 464 aa11.35□□□□□ -0.59
SHMT2-228ENST00000557302 GPR148Q8TDV2 347 aa11.35□□□□□ -0.59
SHMT2-228ENST00000557302 RGP1Q92546 391 aaPredicted RBP11.35□□□□□ -0.59
SHMT2-228ENST00000557302 SGCDQ92629 289 aa11.35□□□□□ -0.59
SHMT2-228ENST00000557302 C12orf43Q96C57 262 aaKnown RBP11.35□□□□□ -0.59
SHMT2-228ENST00000557302 BORCS8Q96FH0 119 aa11.35□□□□□ -0.59
SHMT2-228ENST00000557302 CDCA4Q9BXL8 241 aa11.35□□□□□ -0.59
SHMT2-228ENST00000557302 WDR13Q9H1Z4 485 aa11.35□□□□□ -0.59
SHMT2-228ENST00000557302 DUSP21Q9H596 190 aa11.35□□□□□ -0.59
SHMT2-228ENST00000557302 DNAJB11Q9UBS4 358 aa11.35□□□□□ -0.59
SHMT2-228ENST00000557302 BLOC1S6Q9UL45 172 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms