RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 WDR34Q96EX3 536 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 WDR54Q9H977 334 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 COL24A1Q17RW2 1714 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 XRCC3O43542 346 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 MPZL1O95297 269 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 CTRB1P17538 263 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 DHODHQ02127 395 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 TLE1Q04724 770 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 CTRB2Q6GPI1 263 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 LRFN3Q9BTN0 628 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 CDCA4Q9BXL8 241 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 IL5P05113 134 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 SELENOPP49908 381 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 CD226Q15762 336 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 ZNF141Q15928 474 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 RSPO4Q2I0M5 234 aaPredicted RBP7.31□□□□□ -1.24
SYNE2-220ENST00000555612 ACSM6Q6P461 480 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 TVP23CQ96ET8 276 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 TMEM56Q96MV1 263 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 GON7Q9BXV9 100 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 DUSP21Q9H596 190 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 UCK1Q9HA47 277 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 AK3Q9UIJ7 227 aa7.31□□□□□ -1.24
SYNE2-220ENST00000555612 TBX19O60806 448 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 NTN1O95631 604 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 LY86O95711 162 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 CDC20Q12834 499 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 GGTLC2Q14390 218 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 KISS1Q15726 138 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 WDR38Q5JTN6 314 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 FAM122CQ6P4D5 195 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 UBE3DQ7Z6J8 389 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 MOGAT1Q96PD6 335 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 OR13C7P0DN81 318 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 BRS3P32247 399 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 MLF1P58340 268 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 MFSD4AQ8N468 514 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 CHODLQ9H9P2 273 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 CYSLTR2Q9NS75 346 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 CLEC5AQ9NY25 188 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 TINAGQ9UJW2 476 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 H3BP45 60 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 CYTIPO60759 359 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 H2AFB1P0C5Y9 115 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 OPRK1P41145 380 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 FAHD1Q6P587 224 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 MITD1Q8WV92 249 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 DERL3Q96Q80 235 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 PILRBQ9UKJ0 227 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 CLEC18AA5D8T8 446 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 PNLIPP16233 465 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 RPL35P42766 123 aaKnown RBP7.3□□□□□ -1.24
SYNE2-220ENST00000555612 SLC25A1P53007 311 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 FAM27D1Q5T7N8 215 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 BAGE3Q86Y29 109 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 BAGE2Q86Y30 109 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 RIMKLAQ8IXN7 391 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 WDR31Q8NA23 367 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 CLEC18CQ8NCF0 446 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 NIPSNAP3BQ9BS92 247 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 OR6C68A6NDL8 312 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 SERPINE3A8MV23 424 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 CD96P40200 585 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 WNT3P56703 355 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 ACOT6Q3I5F7 207 aaPredicted RBP7.3□□□□□ -1.24
SYNE2-220ENST00000555612 C1QL3Q5VWW1 255 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 TIPARPQ7Z3E1 657 aaKnown RBP7.3□□□□□ -1.24
SYNE2-220ENST00000555612 SLC22A18ASQ8N1D0 253 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 ICAM5Q9UMF0 924 aa7.3□□□□□ -1.24
SYNE2-220ENST00000555612 GPR31O00270 319 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 OPN1MWP04001 364 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 CELA2AP08217 269 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 OPN1MW2P0DN77 364 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 OPN1MW3P0DN78 364 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 CTLA4P16410 223 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 EPHA2P29317 976 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 PLAC9Q5JTB6 97 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 RPL7L1Q6DKI1 246 aaKnown RBP7.29□□□□□ -1.24
SYNE2-220ENST00000555612 PRR27Q6MZM9 219 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 THSD4Q6ZMP0 1018 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 OR52N4Q8NGI2 321 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 YIPF5Q969M3 257 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 UCN2Q96RP3 112 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 MS4A5Q9H3V2 200 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 AUNIPQ9H7T9 357 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 ZNF331Q9NQX6 463 aaPredicted RBP7.29□□□□□ -1.24
SYNE2-220ENST00000555612 IL36GQ9NZH8 169 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 ERRFI1Q9UJM3 462 aaPredicted RBP7.29□□□□□ -1.24
SYNE2-220ENST00000555612 FOXJ3Q9UPW0 622 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 KCNMB2Q9Y691 235 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 NME2P1O60361 137 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 HRASP01112 189 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 S100A4P26447 101 aaKnown RBP7.29□□□□□ -1.24
SYNE2-220ENST00000555612 SLC25A35Q3KQZ1 300 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 SLC38A6Q8IZM9 456 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 TMEM123Q8N131 208 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 OR4S1Q8NGB4 309 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 OR4F5Q8NH21 305 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 OR4F4Q96R69 305 aa7.29□□□□□ -1.24
SYNE2-220ENST00000555612 ZNF320A2RRD8 509 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms