RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 UBAC2Q8NBM4 344 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 UNKLQ9H9P5 680 aaKnown RBP12.93□□□□□ -0.34
HOXC11-202ENST00000546378 SMCO4Q9NRQ5 59 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 KIR2DS5A0A0G2JLQ3 304 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 A0A0G2JNG1 304 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 MEGF11A6BM72 1044 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 KIR2DS3K7RE56 304 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 PTAFRP25105 342 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 PPICP45877 212 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 POLR2HP52434 150 aaKnown RBP12.93□□□□□ -0.34
HOXC11-202ENST00000546378 TMEM50BP56557 158 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 B2MP61769 119 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 RUNX1Q01196 453 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 KIR2DS5Q14953 304 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 GKN2Q86XP6 184 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 ASB17Q8WXJ9 295 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 TMEM230Q96A57 120 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 VN1R1Q9GZP7 353 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 SLC2A8Q9NY64 477 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 PPP4R1LQ9P1A2 415 aa12.93□□□□□ -0.34
HOXC11-202ENST00000546378 RCC2Q9P258 522 aaKnown RBP12.93□□□□□ -0.34
HOXC11-202ENST00000546378 VSTM2BA6NLU5 285 aa12.92□□□□□ -0.34
HOXC11-202ENST00000546378 PHF1O43189 567 aaPredicted RBP12.92□□□□□ -0.34
HOXC11-202ENST00000546378 NDUFA2O43678 99 aa12.92□□□□□ -0.34
HOXC11-202ENST00000546378 IL33O95760 270 aa12.92□□□□□ -0.34
HOXC11-202ENST00000546378 ZNF43P17038 809 aa12.92□□□□□ -0.34
HOXC11-202ENST00000546378 PIGPP57054 158 aa12.92□□□□□ -0.34
HOXC11-202ENST00000546378 HNRNPKP61978 463 aaKnown RBP eCLIP12.92□□□□□ -0.34
HOXC11-202ENST00000546378 OR10A2Q9H208 303 aa12.92□□□□□ -0.34
HOXC11-202ENST00000546378 COA4Q9NYJ1 87 aa12.92□□□□□ -0.34
HOXC11-202ENST00000546378 TRBV11-1A0A0K0K1C0 115 aa12.92□□□□□ -0.34
HOXC11-202ENST00000546378 DHRS7CA6NNS2 312 aa12.92□□□□□ -0.34
HOXC11-202ENST00000546378 TNFSF14O43557 240 aa12.92□□□□□ -0.34
HOXC11-202ENST00000546378 CD74P04233 296 aa12.92□□□□□ -0.34
HOXC11-202ENST00000546378 P2RY4P51582 365 aa12.92□□□□□ -0.34
HOXC11-202ENST00000546378 OR9K2Q8NGE7 335 aa12.92□□□□□ -0.34
HOXC11-202ENST00000546378 WFIKKN1Q96NZ8 548 aa12.92□□□□□ -0.34
HOXC11-202ENST00000546378 LPAR5Q9H1C0 372 aa12.92□□□□□ -0.34
HOXC11-202ENST00000546378 MMP26Q9NRE1 261 aa12.92□□□□□ -0.34
HOXC11-202ENST00000546378 SLC7A11Q9UPY5 501 aa12.92□□□□□ -0.34
HOXC11-202ENST00000546378 PIGLQ9Y2B2 252 aa12.92□□□□□ -0.34
HOXC11-202ENST00000546378 TRAV39A0A0B4J263 110 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 PRR19A6NJB7 356 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 OR5K4A6NMS3 321 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 E9PLN8 166 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 CDC14BO60729 498 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 HLA-HP01893 362 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 S100PP25815 95 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 MTCP1P56278 107 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 GUK1Q16774 197 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 GFI1BQ5VTD9 330 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 HIST1H2BAQ96A08 127 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 CMTM3Q96MX0 182 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 PCOLCE2Q9UKZ9 415 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 A0A1B0GTI1 187 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 ZNF814B7Z6K7 855 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 PHYHO14832 338 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 OR5AC1P0C628 307 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 RNF224P0DH78 156 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 HIST1H1DP16402 221 aaKnown RBP12.91□□□□□ -0.34
HOXC11-202ENST00000546378 FUT7Q11130 342 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 SGPP2Q8IWX5 399 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 UEVLDQ8IX04 471 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 SLC19A3Q9BZV2 496 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 AKIRIN1Q9H9L7 192 aaPredicted RBP12.91□□□□□ -0.34
HOXC11-202ENST00000546378 POLE3Q9NRF9 147 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 CLDN16Q9Y5I7 305 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 FAM24AA6NFZ4 105 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 ZNF41P51814 821 aaPredicted RBP12.91□□□□□ -0.34
HOXC11-202ENST00000546378 MYBPHQ13203 477 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 IGFBP7Q16270 282 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 GGNBP1Q5YKI7 109 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 FBXW12Q6X9E4 464 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 OR10D4PQ8NGN7 298 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 URM1Q9BTM9 101 aaKnown RBP12.91□□□□□ -0.34
HOXC11-202ENST00000546378 CNTNAP3Q9BZ76 1288 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 ZNF442Q9H7R0 627 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 CYTL1Q9NRR1 136 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 HSF4Q9ULV5 492 aa12.91□□□□□ -0.34
HOXC11-202ENST00000546378 CXorf65A6NEN9 183 aa12.9□□□□□ -0.34
HOXC11-202ENST00000546378 ZFP92A6NM28 416 aa12.9□□□□□ -0.34
HOXC11-202ENST00000546378 OR7C1O76099 320 aaPredicted RBP12.9□□□□□ -0.34
HOXC11-202ENST00000546378 CD8AP01732 235 aa12.9□□□□□ -0.34
HOXC11-202ENST00000546378 CELA2AP08217 269 aa12.9□□□□□ -0.34
HOXC11-202ENST00000546378 RAET1LQ5VY80 246 aa12.9□□□□□ -0.34
HOXC11-202ENST00000546378 ZNF813Q6ZN06 617 aa12.9□□□□□ -0.34
HOXC11-202ENST00000546378 H1FNTQ75WM6 255 aaPredicted RBP12.9□□□□□ -0.34
HOXC11-202ENST00000546378 OR10G3Q8NGC4 313 aa12.9□□□□□ -0.34
HOXC11-202ENST00000546378 POM121Q96HA1 1249 aa12.9□□□□□ -0.34
HOXC11-202ENST00000546378 RIF1Q5UIP0 2472 aaKnown RBP12.9□□□□□ -0.34
HOXC11-202ENST00000546378 FREM1Q5H8C1 2179 aa12.9□□□□□ -0.34
HOXC11-202ENST00000546378 MS4A18H0YCH9 400 aa12.9□□□□□ -0.34
HOXC11-202ENST00000546378 CCL2P13500 99 aa12.9□□□□□ -0.34
HOXC11-202ENST00000546378 PTGER4P35408 488 aa12.9□□□□□ -0.34
HOXC11-202ENST00000546378 AFF3P51826 1226 aaKnown RBP12.9□□□□□ -0.34
HOXC11-202ENST00000546378 HSD17B7P56937 341 aa12.9□□□□□ -0.34
HOXC11-202ENST00000546378 GABREP78334 506 aa12.9□□□□□ -0.34
HOXC11-202ENST00000546378 KISS1Q15726 138 aa12.9□□□□□ -0.34
HOXC11-202ENST00000546378 MS4A18Q3C1V0 323 aa12.9□□□□□ -0.34
HOXC11-202ENST00000546378 DNM1P34Q6PK57 102 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms