RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 CHRDL1Q9BU40 450 aa2.58□□□□□ -2
USP28-210ENST00000542033 RPP25Q9BUL9 199 aaKnown RBP2.58□□□□□ -2
USP28-210ENST00000542033 RIOK2Q9BVS4 552 aaKnown RBP2.58□□□□□ -2
USP28-210ENST00000542033 HINT2Q9BX68 163 aa2.58□□□□□ -2
USP28-210ENST00000542033 OCR1Q9BZK8 76 aa2.58□□□□□ -2
USP28-210ENST00000542033 CHST5Q9GZS9 411 aa2.58□□□□□ -2
USP28-210ENST00000542033 SLIRPQ9GZT3 109 aaKnown RBP2.58□□□□□ -2
USP28-210ENST00000542033 TMEM38AQ9H6F2 299 aa2.58□□□□□ -2
USP28-210ENST00000542033 TMEM185BQ9H7F4 350 aa2.58□□□□□ -2
USP28-210ENST00000542033 GEMIN7Q9H840 131 aaKnown RBP2.58□□□□□ -2
USP28-210ENST00000542033 RPS10P5Q9NQ39 176 aa2.58□□□□□ -2
USP28-210ENST00000542033 AGPAT4Q9NRZ5 378 aa2.58□□□□□ -2
USP28-210ENST00000542033 DEPPQ9NTK1 212 aa2.58□□□□□ -2
USP28-210ENST00000542033 CUTCQ9NTM9 273 aa2.58□□□□□ -2
USP28-210ENST00000542033 GNG12Q9UBI6 72 aa2.58□□□□□ -2
USP28-210ENST00000542033 TBC1D24Q9ULP9 559 aa2.58□□□□□ -2
USP28-210ENST00000542033 RHBDD3Q9Y3P4 386 aa2.58□□□□□ -2
USP28-210ENST00000542033 ARHGEF28Q8N1W1 1705 aaKnown RBP2.58□□□□□ -2
USP28-210ENST00000542033 KIAA1551Q9HCM1 1747 aa2.58□□□□□ -2
USP28-210ENST00000542033 KIF13BQ9NQT8 1826 aa2.58□□□□□ -2
USP28-210ENST00000542033 METP08581 1390 aa2.58□□□□□ -2
USP28-210ENST00000542033 BCL9LQ86UU0 1499 aa2.58□□□□□ -2
USP28-210ENST00000542033 ARHGAP23Q9P227 1491 aa2.58□□□□□ -2
USP28-210ENST00000542033 SLIT3O75094 1523 aa2.58□□□□□ -2
USP28-210ENST00000542033 TRPM2O94759 1503 aa2.58□□□□□ -2
USP28-210ENST00000542033 DLC1Q96QB1 1528 aa2.58□□□□□ -2
USP28-210ENST00000542033 MROH2AA6NES4 1674 aa2.57□□□□□ -2
USP28-210ENST00000542033 PIK3C2AO00443 1686 aa2.57□□□□□ -2
USP28-210ENST00000542033 XRN1Q8IZH2 1706 aaKnown RBP2.57□□□□□ -2
USP28-210ENST00000542033 PARP4Q9UKK3 1724 aaKnown RBP2.57□□□□□ -2
USP28-210ENST00000542033 TRAV26-1A0A087WT03 109 aa2.57□□□□□ -2
USP28-210ENST00000542033 TRGV8A0A0C4DH27 118 aa2.57□□□□□ -2
USP28-210ENST00000542033 TRBV5-4A0A0C4DH59 114 aa2.57□□□□□ -2
USP28-210ENST00000542033 A0A0G2JND7 137 aa2.57□□□□□ -2
USP28-210ENST00000542033 TRBV7-9A0A0J9YWB2 115 aa2.57□□□□□ -2
USP28-210ENST00000542033 A0A1B0GW15 77 aa2.57□□□□□ -2
USP28-210ENST00000542033 TRAPPC13A5PLN9 417 aa2.57□□□□□ -2
USP28-210ENST00000542033 FAM74A7A6NL05 159 aa2.57□□□□□ -2
USP28-210ENST00000542033 SHISA9B4DS77 424 aa2.57□□□□□ -2
USP28-210ENST00000542033 DISC1C4P0D8 188 aa2.57□□□□□ -2
USP28-210ENST00000542033 C9J4A7 227 aa2.57□□□□□ -2
USP28-210ENST00000542033 TRAPPC2LH3BP13 241 aa2.57□□□□□ -2
USP28-210ENST00000542033 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.57□□□□□ -2
USP28-210ENST00000542033 M0R233 179 aa2.57□□□□□ -2
USP28-210ENST00000542033 BCKDKO14874 412 aa2.57□□□□□ -2
USP28-210ENST00000542033 MYL12BO14950 172 aa2.57□□□□□ -2
USP28-210ENST00000542033 TGOLN2O43493 480 aa2.57□□□□□ -2
USP28-210ENST00000542033 KLRC4O43908 158 aa2.57□□□□□ -2
USP28-210ENST00000542033 FCMRO60667 390 aa2.57□□□□□ -2
USP28-210ENST00000542033 GALR3O60755 368 aaPredicted RBP2.57□□□□□ -2
USP28-210ENST00000542033 RAMP1O60894 148 aa2.57□□□□□ -2
USP28-210ENST00000542033 RP2O75695 350 aa2.57□□□□□ -2
USP28-210ENST00000542033 NUDT14O95848 222 aa2.57□□□□□ -2
USP28-210ENST00000542033 HPP00738 406 aa2.57□□□□□ -2
USP28-210ENST00000542033 PDYNP01213 254 aa2.57□□□□□ -2
USP28-210ENST00000542033 IFNA5P01569 189 aa2.57□□□□□ -2
USP28-210ENST00000542033 IGHG1P01857 330 aa2.57□□□□□ -2
USP28-210ENST00000542033 APOC3P02656 99 aa2.57□□□□□ -2
USP28-210ENST00000542033 MT-ND4LP03901 98 aa2.57□□□□□ -2
USP28-210ENST00000542033 BPGMP07738 259 aa2.57□□□□□ -2
USP28-210ENST00000542033 FCGR3AP08637 254 aa2.57□□□□□ -2
USP28-210ENST00000542033 OR9G9P0C7N8 305 aa2.57□□□□□ -2
USP28-210ENST00000542033 SPNP16150 400 aa2.57□□□□□ -2
USP28-210ENST00000542033 NELFEP18615 380 aaKnown RBP2.57□□□□□ -2
USP28-210ENST00000542033 RCC1P18754 421 aaPredicted RBP2.57□□□□□ -2
USP28-210ENST00000542033 MYL12AP19105 171 aa2.57□□□□□ -2
USP28-210ENST00000542033 TPSB2P20231 275 aa2.57□□□□□ -2
USP28-210ENST00000542033 RPS3P23396 243 aaKnown RBP eCLIP2.57□□□□□ -2
USP28-210ENST00000542033 KDELR1P24390 212 aa2.57□□□□□ -2
USP28-210ENST00000542033 MAP2K4P45985 399 aa2.57□□□□□ -2
USP28-210ENST00000542033 RFX3P48380 749 aa2.57□□□□□ -2
USP28-210ENST00000542033 ARRB1P49407 418 aaPredicted RBP2.57□□□□□ -2
USP28-210ENST00000542033 NOVA1P51513 510 aaKnown RBP2.57□□□□□ -2
USP28-210ENST00000542033 CDKN2DP55273 166 aa2.57□□□□□ -2
USP28-210ENST00000542033 BDH1Q02338 343 aa2.57□□□□□ -2
USP28-210ENST00000542033 ZNF85Q03923 595 aa2.57□□□□□ -2
USP28-210ENST00000542033 ZFP36L1Q07352 338 aaKnown RBP2.57□□□□□ -2
USP28-210ENST00000542033 ZNF616Q08AN1 781 aa2.57□□□□□ -2
USP28-210ENST00000542033 TPSAB1Q15661 275 aa2.57□□□□□ -2
USP28-210ENST00000542033 UBE2V2Q15819 145 aa2.57□□□□□ -2
USP28-210ENST00000542033 POU2AF1Q16633 256 aa2.57□□□□□ -2
USP28-210ENST00000542033 NRF1Q16656 503 aa2.57□□□□□ -2
USP28-210ENST00000542033 NDUFA9Q16795 377 aa2.57□□□□□ -2
USP28-210ENST00000542033 CYP51A1Q16850 503 aa2.57□□□□□ -2
USP28-210ENST00000542033 TMEM241Q24JQ0 296 aa2.57□□□□□ -2
USP28-210ENST00000542033 SLC36A2Q495M3 483 aa2.57□□□□□ -2
USP28-210ENST00000542033 FAM74A3Q4VXF1 159 aa2.57□□□□□ -2
USP28-210ENST00000542033 PYY3Q5JQD4 70 aa2.57□□□□□ -2
USP28-210ENST00000542033 DCST2Q5T1A1 773 aa2.57□□□□□ -2
USP28-210ENST00000542033 AKR1C8PQ5T2L2 129 aa2.57□□□□□ -2
USP28-210ENST00000542033 SYPL2Q5VXT5 272 aa2.57□□□□□ -2
USP28-210ENST00000542033 FAM45BPQ6NSW5 357 aa2.57□□□□□ -2
USP28-210ENST00000542033 APOOLQ6UXV4 268 aa2.57□□□□□ -2
USP28-210ENST00000542033 FBXW12Q6X9E4 464 aa2.57□□□□□ -2
USP28-210ENST00000542033 RNF165Q6ZSG1 346 aa2.57□□□□□ -2
USP28-210ENST00000542033 LANCL3Q6ZV70 420 aa2.57□□□□□ -2
USP28-210ENST00000542033 TMEM144Q7Z5S9 345 aa2.57□□□□□ -2
USP28-210ENST00000542033 ACOT1Q86TX2 421 aa2.57□□□□□ -2
USP28-210ENST00000542033 LINC01551Q86U37 167 aa2.57□□□□□ -2
USP28-210ENST00000542033 OAFQ86UD1 273 aa2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms