RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 OR4K15Q8NH41 348 aa11.98□□□□□ -0.49
RTN3-210ENST00000540798 PIGTQ969N2 578 aa11.98□□□□□ -0.49
RTN3-210ENST00000540798 C1QTNF6Q9BXI9 259 aa11.98□□□□□ -0.49
RTN3-210ENST00000540798 C1QTNF5Q9BXJ0 243 aa11.98□□□□□ -0.49
RTN3-210ENST00000540798 SLC7A10Q9NS82 523 aa11.98□□□□□ -0.49
RTN3-210ENST00000540798 MED13Q9UHV7 2174 aa11.98□□□□□ -0.49
RTN3-210ENST00000540798 NFYAP23511 347 aaPredicted RBP11.98□□□□□ -0.49
RTN3-210ENST00000540798 RPL35P42766 123 aaKnown RBP11.98□□□□□ -0.49
RTN3-210ENST00000540798 OR8B8Q15620 311 aa11.98□□□□□ -0.49
RTN3-210ENST00000540798 ZFP62Q8NB50 900 aaPredicted RBP11.98□□□□□ -0.49
RTN3-210ENST00000540798 PECRQ9BY49 303 aa11.98□□□□□ -0.49
RTN3-210ENST00000540798 PRDM14Q9GZV8 571 aa11.98□□□□□ -0.49
RTN3-210ENST00000540798 SAV1Q9H4B6 383 aaPredicted RBP11.98□□□□□ -0.49
RTN3-210ENST00000540798 ACKR4Q9NPB9 350 aa11.98□□□□□ -0.49
RTN3-210ENST00000540798 GPR173Q9NS66 373 aa11.98□□□□□ -0.49
RTN3-210ENST00000540798 PARPBPQ9NWS1 579 aa11.98□□□□□ -0.49
RTN3-210ENST00000540798 AUP1Q9Y679 476 aa11.98□□□□□ -0.49
RTN3-210ENST00000540798 IGKV1-27A0A075B6S5 117 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 CD8AP01732 235 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 LCATP04180 440 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 CSN2P05814 226 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 CD82P27701 267 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 MEOX1P50221 254 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 AKR1D1P51857 326 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 C17orf107Q6ZR85 190 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 LYG2Q86SG7 212 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 ARRDC1Q8N5I2 433 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 Q96M66 194 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 PMP2P02689 132 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 SEC61A1P61619 476 aaKnown RBP11.97□□□□□ -0.49
RTN3-210ENST00000540798 FAM3AP98173 230 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 PPA1Q15181 289 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 CNN3Q15417 329 aaKnown RBP11.97□□□□□ -0.49
RTN3-210ENST00000540798 LPCAT3Q6P1A2 487 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 GALNTL5Q7Z4T8 443 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 CPEB3Q8NE35 698 aaKnown RBP11.97□□□□□ -0.49
RTN3-210ENST00000540798 OR5M8Q8NGP6 311 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 DPCDQ9BVM2 203 aaPredicted RBP11.97□□□□□ -0.49
RTN3-210ENST00000540798 SERPINE3A8MV23 424 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 SYNGR4O95473 234 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 EDN3P14138 238 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 CPT2P23786 658 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 SRYQ05066 204 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 OPCMLQ14982 345 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 ARL6IP1Q15041 203 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 TUSC5Q8IXB3 177 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 AHCTF1Q8WYP5 2266 aa11.97□□□□□ -0.49
RTN3-210ENST00000540798 PCNX2A6NKB5 2137 aa11.96□□□□□ -0.49
RTN3-210ENST00000540798 C9orf170A2RU37 121 aa11.96□□□□□ -0.49
RTN3-210ENST00000540798 LINC00862A6NCI5 91 aa11.96□□□□□ -0.49
RTN3-210ENST00000540798 CDRT15L2A8MXV6 281 aa11.96□□□□□ -0.49
RTN3-210ENST00000540798 KLRC4-KLRK1H3BQV0 150 aa11.96□□□□□ -0.49
RTN3-210ENST00000540798 FARS2O95363 451 aaKnown RBP11.96□□□□□ -0.49
RTN3-210ENST00000540798 SERPINA2P20848 420 aa11.96□□□□□ -0.49
RTN3-210ENST00000540798 C4BPBP20851 252 aa11.96□□□□□ -0.49
RTN3-210ENST00000540798 EXOSC2Q13868 293 aaKnown RBP11.96□□□□□ -0.49
RTN3-210ENST00000540798 PABPC1L2AQ5JQF8 200 aa11.96□□□□□ -0.49
RTN3-210ENST00000540798 LHFPL1Q86WI0 220 aa11.96□□□□□ -0.49
RTN3-210ENST00000540798 OR10K1Q8NGX5 313 aa11.96□□□□□ -0.49
RTN3-210ENST00000540798 MITD1Q8WV92 249 aa11.96□□□□□ -0.49
RTN3-210ENST00000540798 ELMOD3Q96FG2 381 aa11.96□□□□□ -0.49
RTN3-210ENST00000540798 CPNE2Q96FN4 548 aaPredicted RBP11.96□□□□□ -0.49
RTN3-210ENST00000540798 MCTS1Q9ULC4 181 aaKnown RBP11.96□□□□□ -0.49
RTN3-210ENST00000540798 ZNF98A6NK75 572 aa11.96□□□□□ -0.5
RTN3-210ENST00000540798 FAM25EA8MYX2 175 aa11.96□□□□□ -0.5
RTN3-210ENST00000540798 EFSO43281 561 aa11.96□□□□□ -0.5
RTN3-210ENST00000540798 ACTL6AO96019 429 aa11.96□□□□□ -0.5
RTN3-210ENST00000540798 ARF1P84077 181 aaKnown RBP11.96□□□□□ -0.5
RTN3-210ENST00000540798 ZNF92Q03936 586 aa11.96□□□□□ -0.5
RTN3-210ENST00000540798 PPP1R1AQ13522 171 aa11.96□□□□□ -0.5
RTN3-210ENST00000540798 RTL6Q6ICC9 239 aa11.96□□□□□ -0.5
RTN3-210ENST00000540798 LHFPL2Q6ZUX7 228 aa11.96□□□□□ -0.5
RTN3-210ENST00000540798 TERB2Q8NHR7 220 aa11.96□□□□□ -0.5
RTN3-210ENST00000540798 MS4A7Q9GZW8 240 aaPredicted RBP11.96□□□□□ -0.5
RTN3-210ENST00000540798 CLEC4MQ9H2X3 399 aaPredicted RBP11.96□□□□□ -0.5
RTN3-210ENST00000540798 ARHGAP21Q5T5U3 1957 aa11.96□□□□□ -0.5
RTN3-210ENST00000540798 RPS10-NUDT3A0A1W2PQS6 291 aa11.95□□□□□ -0.5
RTN3-210ENST00000540798 M0R233 179 aa11.95□□□□□ -0.5
RTN3-210ENST00000540798 XRCC2O43543 280 aa11.95□□□□□ -0.5
RTN3-210ENST00000540798 IFNA7P01567 189 aa11.95□□□□□ -0.5
RTN3-210ENST00000540798 HLA-AP01891 365 aaKnown RBP11.95□□□□□ -0.5
RTN3-210ENST00000540798 COX5BP10606 129 aa11.95□□□□□ -0.5
RTN3-210ENST00000540798 BLVRBP30043 206 aaPredicted RBP11.95□□□□□ -0.5
RTN3-210ENST00000540798 MTCP1P56278 107 aa11.95□□□□□ -0.5
RTN3-210ENST00000540798 PLGLB1Q02325 96 aa11.95□□□□□ -0.5
RTN3-210ENST00000540798 PLXDC2Q6UX71 529 aa11.95□□□□□ -0.5
RTN3-210ENST00000540798 PEG10Q86TG7 708 aaKnown RBP11.95□□□□□ -0.5
RTN3-210ENST00000540798 IL22RA1Q8N6P7 574 aa11.95□□□□□ -0.5
RTN3-210ENST00000540798 PARD6AQ9NPB6 346 aa11.95□□□□□ -0.5
RTN3-210ENST00000540798 TRAV14DV4A0A0A6YYC5 116 aa11.95□□□□□ -0.5
RTN3-210ENST00000540798 TRAV20A0A0B4J274 112 aa11.95□□□□□ -0.5
RTN3-210ENST00000540798 CFDP00746 253 aaPredicted RBP11.95□□□□□ -0.5
RTN3-210ENST00000540798 IFNA6P05013 189 aa11.95□□□□□ -0.5
RTN3-210ENST00000540798 CD34P28906 385 aa11.95□□□□□ -0.5
RTN3-210ENST00000540798 PPIAP62937 165 aaKnown RBP11.95□□□□□ -0.5
RTN3-210ENST00000540798 RNPS1Q15287 305 aaKnown RBP11.95□□□□□ -0.5
RTN3-210ENST00000540798 ADAD2Q8NCV1 583 aaKnown RBP11.95□□□□□ -0.5
RTN3-210ENST00000540798 FNDC9Q8TBE3 224 aa11.95□□□□□ -0.5
RTN3-210ENST00000540798 S100A13Q99584 98 aa11.95□□□□□ -0.5
RTN3-210ENST00000540798 IL36GQ9NZH8 169 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 156.5 ms