RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 C5orf34Q96MH7 638 aa5.8□□□□□ -1.48
USP28-202ENST00000535607 CMKLR1Q99788 373 aa5.8□□□□□ -1.48
USP28-202ENST00000535607 NUDT22Q9BRQ3 303 aa5.8□□□□□ -1.48
USP28-202ENST00000535607 TIMM29Q9BSF4 260 aa5.8□□□□□ -1.48
USP28-202ENST00000535607 NUDT9Q9BW91 350 aa5.8□□□□□ -1.48
USP28-202ENST00000535607 LAT2Q9GZY6 243 aa5.8□□□□□ -1.48
USP28-202ENST00000535607 SPACA1Q9HBV2 294 aa5.8□□□□□ -1.48
USP28-202ENST00000535607 C1orf123Q9NWV4 160 aa5.8□□□□□ -1.48
USP28-202ENST00000535607 FBXO4Q9UKT5 387 aa5.8□□□□□ -1.48
USP28-202ENST00000535607 C14orf166Q9Y224 244 aaKnown RBP5.8□□□□□ -1.48
USP28-202ENST00000535607 TP53TG5Q9Y2B4 290 aa5.8□□□□□ -1.48
USP28-202ENST00000535607 F5P12259 2224 aa5.8□□□□□ -1.48
USP28-202ENST00000535607 VCANP13611 3396 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 PIGBOS1A0A0B4J2F0 54 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 A0A1B0GWJ7 208 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 E5RGE8 158 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 DCTN6O00399 190 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 PPIHO43447 177 aaKnown RBP5.79□□□□□ -1.48
USP28-202ENST00000535607 PLRG1O43660 514 aaKnown RBP5.79□□□□□ -1.48
USP28-202ENST00000535607 ZNF217O75362 1048 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 PRKRAO75569 313 aaKnown RBP5.79□□□□□ -1.48
USP28-202ENST00000535607 NKX2-2O95096 273 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 NTN1O95631 604 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 GPR75O95800 540 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 HLA-DQA2P01906 255 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 SERPINA5P05154 406 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 CSN2P05814 226 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 ITGA5P08648 1049 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 CD37P11049 281 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 SFTPCP11686 197 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 ALOX5APP20292 161 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 FGF7P21781 194 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 PSMB5P28074 263 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 RPL12P30050 165 aaKnown RBP5.79□□□□□ -1.48
USP28-202ENST00000535607 DRD3P35462 400 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 SNCAP37840 140 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 RBMXP38159 391 aaKnown RBP5.79□□□□□ -1.48
USP28-202ENST00000535607 P2RY2P41231 377 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 ACTR1BP42025 376 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 LPAR6P43657 344 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 OR3A2P47893 321 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 EFNB2P52799 333 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 UCP2P55851 309 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 OR2B8PP59922 312 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 S100A10P60903 97 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 RPS4XP62701 263 aaKnown RBP5.79□□□□□ -1.48
USP28-202ENST00000535607 BTG2P78543 158 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 ZXDAP98168 799 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 SLC17A1Q14916 467 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 RSU1Q15404 277 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 ZNF141Q15928 474 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 ZNF674Q2M3X9 581 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 LINC01590Q5TEZ4 76 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 WBP2NLQ6ICG8 309 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 RPUSD3Q6P087 351 aaKnown RBP5.79□□□□□ -1.48
USP28-202ENST00000535607 HEPN1Q6WQI6 88 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 HOGA1Q86XE5 327 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 ZNF547Q8IVP9 402 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 ZNF679Q8IYX0 411 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 SLC22A24Q8N4F4 322 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 SPEM1Q8N4L4 309 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 AMER3Q8N944 861 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 LMNTD1Q8N9Z9 388 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 BEND2Q8NDZ0 799 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 TSTD1Q8NFU3 115 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 OR2L3Q8NG85 312 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 OR13C3Q8NGS6 347 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 OR5H2Q8NGV7 314 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 MFSD8Q8NHS3 518 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 FNDC9Q8TBE3 224 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 RNF128Q8TEB7 428 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 SECTM1Q8WVN6 248 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 RERGQ96A58 199 aaPredicted RBP5.79□□□□□ -1.48
USP28-202ENST00000535607 KTI12Q96EK9 354 aaPredicted RBP5.79□□□□□ -1.48
USP28-202ENST00000535607 SLC25A44Q96H78 314 aaPredicted RBP5.79□□□□□ -1.48
USP28-202ENST00000535607 COX14Q96I36 57 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 TMEM68Q96MH6 324 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 OR8B4Q96RC9 309 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 NAA11Q9BSU3 229 aaPredicted RBP5.79□□□□□ -1.48
USP28-202ENST00000535607 RNF126Q9BV68 326 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 TWSG1Q9GZX9 223 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 PCED1AQ9H1Q7 454 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 SRMSQ9H3Y6 488 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 ELOVL3Q9HB03 270 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 Q9N2J8 555 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 PDE7BQ9NP56 450 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 ZDHHC4Q9NPG8 344 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 PHPT1Q9NRX4 125 aaPredicted RBP5.79□□□□□ -1.48
USP28-202ENST00000535607 KCNK6Q9Y257 313 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 NSG2Q9Y328 171 aa5.79□□□□□ -1.48
USP28-202ENST00000535607 MDC1Q14676 2089 aaKnown RBP5.79□□□□□ -1.48
USP28-202ENST00000535607 LOC100509620A0A075B734 347 aa5.78□□□□□ -1.48
USP28-202ENST00000535607 TCRBV21S2A2A0A5A6 115 aa5.78□□□□□ -1.48
USP28-202ENST00000535607 LINC00473A8K010 186 aa5.78□□□□□ -1.48
USP28-202ENST00000535607 CEACAM18A8MTB9 384 aa5.78□□□□□ -1.48
USP28-202ENST00000535607 MKRN2OSH3BPM6 223 aa5.78□□□□□ -1.48
USP28-202ENST00000535607 M0QZK8 103 aa5.78□□□□□ -1.48
USP28-202ENST00000535607 PEX12O00623 359 aa5.78□□□□□ -1.48
USP28-202ENST00000535607 AGPAT2O15120 278 aa5.78□□□□□ -1.48
USP28-202ENST00000535607 TCAPO15273 167 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms