RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 DCAF12L2Q5VW00 463 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 PLCXD3Q63HM9 321 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 WDR25Q64LD2 544 aaPredicted RBP10.8□□□□□ -0.68
VPS28-216ENST00000533806 STUMQ69YW2 141 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 C8orf59Q8N0T1 100 aaPredicted RBP10.8□□□□□ -0.68
VPS28-216ENST00000533806 BOLLQ8N9W6 283 aaKnown RBP10.8□□□□□ -0.68
VPS28-216ENST00000533806 ZNF485Q8NCK3 441 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 OR4M2Q8NGB6 313 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 OR8B3Q8NGG8 313 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 OR10AC1Q8NH08 325 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 RPS4Y2Q8TD47 263 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 GGHQ92820 318 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 MRPL48Q96GC5 212 aaKnown RBP10.8□□□□□ -0.68
VPS28-216ENST00000533806 OR8B2Q96RD0 313 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 MYCBPQ99417 103 aaPredicted RBP10.8□□□□□ -0.68
VPS28-216ENST00000533806 SSBP3Q9BWW4 388 aaPredicted RBP10.8□□□□□ -0.68
VPS28-216ENST00000533806 WDR13Q9H1Z4 485 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 GPR173Q9NS66 373 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 DIMT1Q9UNQ2 313 aaKnown RBP10.8□□□□□ -0.68
VPS28-216ENST00000533806 INSIG2Q9Y5U4 225 aa10.8□□□□□ -0.68
VPS28-216ENST00000533806 DNHD1Q96M86 4753 aa10.79□□□□□ -0.68
VPS28-216ENST00000533806 KIR2DS1A0A191URI9 304 aa10.79□□□□□ -0.68
VPS28-216ENST00000533806 ANKRD61A6NGH8 418 aa10.79□□□□□ -0.68
VPS28-216ENST00000533806 AKR7A2O43488 359 aa10.79□□□□□ -0.68
VPS28-216ENST00000533806 NOS1APO75052 506 aaPredicted RBP10.79□□□□□ -0.68
VPS28-216ENST00000533806 ZFPL1O95159 310 aa10.79□□□□□ -0.68
VPS28-216ENST00000533806 GYPAP02724 150 aa10.79□□□□□ -0.68
VPS28-216ENST00000533806 ACAA1P09110 424 aaPredicted RBP10.79□□□□□ -0.68
VPS28-216ENST00000533806 PIPP12273 146 aaPredicted RBP10.79□□□□□ -0.68
VPS28-216ENST00000533806 TGM4P49221 684 aa10.79□□□□□ -0.68
VPS28-216ENST00000533806 PAX8Q06710 450 aa10.79□□□□□ -0.68
VPS28-216ENST00000533806 MRPL28Q13084 256 aaKnown RBP10.79□□□□□ -0.68
VPS28-216ENST00000533806 RIPK1Q13546 671 aa10.79□□□□□ -0.68
VPS28-216ENST00000533806 MICBQ29980 383 aa10.79□□□□□ -0.68
VPS28-216ENST00000533806 KCTD8Q6ZWB6 473 aa10.79□□□□□ -0.68
VPS28-216ENST00000533806 NLRC3Q7RTR2 1065 aa10.79□□□□□ -0.68
VPS28-216ENST00000533806 OR51A4Q8NGJ6 313 aa10.79□□□□□ -0.68
VPS28-216ENST00000533806 ADAT3Q96EY9 351 aaPredicted RBP10.79□□□□□ -0.68
VPS28-216ENST00000533806 CHST5Q9GZS9 411 aa10.79□□□□□ -0.68
VPS28-216ENST00000533806 SMURF1Q9HCE7 757 aa10.79□□□□□ -0.68
VPS28-216ENST00000533806 FKBP14Q9NWM8 211 aa10.79□□□□□ -0.68
VPS28-216ENST00000533806 ERVK-18Q9QC07 812 aa10.79□□□□□ -0.68
VPS28-216ENST00000533806 CLN8Q9UBY8 286 aa10.79□□□□□ -0.68
VPS28-216ENST00000533806 PSORS1C1Q9UIG5 152 aa10.79□□□□□ -0.68
VPS28-216ENST00000533806 CAB39Q9Y376 341 aaPredicted RBP10.79□□□□□ -0.68
VPS28-216ENST00000533806 ARHGAP32A7KAX9 2087 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 IGKV1-27A0A075B6S5 117 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 LOC105371242A0A075B767 164 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 IGHV3OR15-7A0A075B7D8 119 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 IGHV2-70DA0A0C4DH43 119 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 IGKV1-9A0A0C4DH69 117 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 IRGMA1A4Y4 181 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 C22orf46C9J442 243 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 H3BSH0 61 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 ADAM20O43506 726 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 NPY4RP50391 375 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 AQP4P55087 323 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 GNB2P62879 340 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 TUSC1Q2TAM9 212 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 C11orf91Q3C1V1 193 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 XAF1Q6GPH4 301 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 HAGHLQ6PII5 290 aaPredicted RBP10.78□□□□□ -0.68
VPS28-216ENST00000533806 UTS2BQ765I0 119 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 C1QL2Q7Z5L3 287 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 ZNF573Q86YE8 665 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 ANGPTL6Q8NI99 470 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 HAVCR2Q8TDQ0 301 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 RAB40AQ8WXH6 277 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 PP6455Q8WZ26 134 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 TMEM80Q96HE8 168 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 DNTTIP1Q9H147 329 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 VCXQ9H320 206 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 C7orf69Q9H7B7 122 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 CNOT2Q9NZN8 540 aaKnown RBP10.78□□□□□ -0.68
VPS28-216ENST00000533806 CLEC2DQ9UHP7 191 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 ZNF222Q9UK12 451 aa10.78□□□□□ -0.68
VPS28-216ENST00000533806 A0A1B0GW55 424 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 J3QT63 122 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 SYNGR1O43759 233 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 XPNPEP2O43895 674 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 DUX4L2P0CJ85 424 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 DUX4L3P0CJ86 424 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 DUX4L4P0CJ87 422 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 DUX4L5P0CJ88 424 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 DUX4L6P0CJ89 424 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 DUX4L7P0CJ90 424 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 PGA5P0DJD9 388 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 PPIAL4GP0DN37 164 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 HAAOP46952 286 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 GTF2A1P52655 376 aaPredicted RBP10.77□□□□□ -0.69
VPS28-216ENST00000533806 GBX2P52951 348 aaPredicted RBP10.77□□□□□ -0.69
VPS28-216ENST00000533806 ERVK11-1P61568 191 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 ST3GAL4Q11206 333 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 CCDC58Q4VC31 144 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 OR2G6Q5TZ20 316 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 CRIP3Q6Q6R5 217 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 DUX4L9Q6RFH8 374 aaPredicted RBP10.77□□□□□ -0.69
VPS28-216ENST00000533806 ZNF788Q6ZQV5 615 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 CALHM1Q8IU99 346 aa10.77□□□□□ -0.69
VPS28-216ENST00000533806 POC1AQ8NBT0 407 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms