RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 RBPMS2Q6ZRY4 209 aaKnown RBP4.82□□□□□ -1.64
CD44-236ENST00000533222 NEGR1Q7Z3B1 354 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 GLT6D1Q7Z4J2 308 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 TMPRSS11BQ86T26 416 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 WDR5BQ86VZ2 330 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 TOMM5Q8N4H5 51 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 TMEM251Q8N6I4 163 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 POC1AQ8NBT0 407 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 SLC26A10Q8NG04 563 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 OR4D11Q8NGI4 311 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 OR5D16Q8NGK9 328 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 OR1P1Q8NH06 330 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 KCNG3Q8TAE7 436 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 TNFAIP8L1Q8WVP5 186 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 NRGNQ92686 78 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 GALMQ96C23 342 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 MS4A6EQ96DS6 147 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 PIK3IP1Q96FE7 263 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 GPR82Q96P67 336 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 TSPAN32Q96QS1 320 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 PRR25Q96S07 402 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 MACROD1Q9BQ69 325 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 MRPL57Q9BQC6 102 aaKnown RBP4.82□□□□□ -1.64
CD44-236ENST00000533222 VN1R3Q9BXE9 311 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 CIPCQ9C0C6 399 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 OR51I1Q9H343 314 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 CDH20Q9HBT6 801 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 LYRM4Q9HD34 91 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 B3GAT2Q9NPZ5 323 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 G6PC2Q9NQR9 355 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 SDR39U1Q9NRG7 319 aaPredicted RBP4.82□□□□□ -1.64
CD44-236ENST00000533222 ASB6Q9NWX5 421 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 TXNL4BQ9NX01 149 aaKnown RBP4.82□□□□□ -1.64
CD44-236ENST00000533222 P2RX2Q9UBL9 471 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 HSF4Q9ULV5 492 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 LAMTOR2Q9Y2Q5 125 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 WIPI2Q9Y4P8 454 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 RAI2Q9Y5P3 530 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 PLXND1Q9Y4D7 1925 aa4.82□□□□□ -1.64
CD44-236ENST00000533222 KIDINS220Q9ULH0 1771 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 ALS2Q96Q42 1657 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 A0A1W2PQM1 296 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 SMIM30A4D0T7 59 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 ARRDC5A6NEK1 342 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 ANKUB1A6NFN9 424 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 IGLON5A6NGN9 336 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 NPIPB15A6NHN6 443 aaPredicted RBP4.81□□□□□ -1.64
CD44-236ENST00000533222 FAM183AA6NL82 134 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 A6NNC1 897 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 E7EQ34 232 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 PEX12O00623 359 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 TAAR5O14804 337 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 AZIN1O14977 448 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 SLC31A1O15431 190 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 P2RX6O15547 441 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 SNAI2O43623 268 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 SYNGR3O43761 229 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 FOXH1O75593 365 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 UPK3AO75631 287 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 NXPH3O95157 252 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 FAM157CP0CG43 387 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 C8orf88P0DMB2 117 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 CEACAM1P13688 526 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 CTSEP14091 401 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 FUT3P21217 361 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 DUSP1P28562 367 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 HTR1FP30939 366 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 GABRA5P31644 462 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 ACVR1BP36896 505 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 HTR6P50406 440 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 PAFAH1B2P68402 229 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 SRPXP78539 464 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 RPL24P83731 157 aaKnown RBP4.81□□□□□ -1.64
CD44-236ENST00000533222 PNRC1Q12796 327 aaPredicted RBP4.81□□□□□ -1.64
CD44-236ENST00000533222 EIF2B1Q14232 305 aaKnown RBP4.81□□□□□ -1.64
CD44-236ENST00000533222 ZNF235Q14590 738 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 RGNQ15493 299 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 SPHARQ15513 63 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 EXT1Q16394 746 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 GLT8D1Q68CQ7 371 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 MRPL54Q6P161 138 aaKnown RBP4.81□□□□□ -1.64
CD44-236ENST00000533222 ZNF549Q6P9A3 640 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 ASCL4Q6XD76 172 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 ZNF705AQ6ZN79 300 aaPredicted RBP4.81□□□□□ -1.64
CD44-236ENST00000533222 TMEM91Q6ZNR0 172 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 UBALD2Q8IYN6 164 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 RNF175Q8N4F7 328 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 C2orf73Q8N5S3 287 aaPredicted RBP4.81□□□□□ -1.64
CD44-236ENST00000533222 FAM24BQ8N5W8 94 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 TCTEX1D1Q8N7M0 179 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 ZSCAN4Q8NAM6 433 aaPredicted RBP4.81□□□□□ -1.64
CD44-236ENST00000533222 OR2Z1Q8NG97 314 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 HMGCLL1Q8TB92 370 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 HAVCR2Q8TDQ0 301 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 THEM6Q8WUY1 208 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 FAM46BQ96A09 425 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 RERGQ96A58 199 aaPredicted RBP4.81□□□□□ -1.64
CD44-236ENST00000533222 CIB3Q96Q77 187 aaPredicted RBP4.81□□□□□ -1.64
CD44-236ENST00000533222 HIST1H2AAQ96QV6 131 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 ABHD1Q96SE0 405 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms