RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 WDFY1Q8IWB7 410 aa12.51□□□□□ -0.41
USP48-213ENST00000529637 FAM71E2Q8N5Q1 922 aa12.51□□□□□ -0.41
USP48-213ENST00000529637 VSX1Q9NZR4 365 aaPredicted RBP12.51□□□□□ -0.41
USP48-213ENST00000529637 DNAJB11Q9UBS4 358 aa12.51□□□□□ -0.41
USP48-213ENST00000529637 HDGFL3Q9Y3E1 203 aa12.51□□□□□ -0.41
USP48-213ENST00000529637 R4GMQ9 66 aa12.51□□□□□ -0.41
USP48-213ENST00000529637 IGKV1D-43A0A0B4J1Z2 117 aa12.51□□□□□ -0.41
USP48-213ENST00000529637 BIDP55957 195 aa12.51□□□□□ -0.41
USP48-213ENST00000529637 NXPH1P58417 271 aa12.51□□□□□ -0.41
USP48-213ENST00000529637 CDCP2Q5VXM1 449 aa12.51□□□□□ -0.41
USP48-213ENST00000529637 OIT3Q8WWZ8 545 aa12.51□□□□□ -0.41
USP48-213ENST00000529637 YPEL4Q96NS1 127 aa12.51□□□□□ -0.41
USP48-213ENST00000529637 RARRES2Q99969 163 aa12.51□□□□□ -0.41
USP48-213ENST00000529637 SH3BGRL3Q9H299 93 aa12.51□□□□□ -0.41
USP48-213ENST00000529637 RFNGQ9Y644 331 aa12.51□□□□□ -0.41
USP48-213ENST00000529637 POMT1Q9Y6A1 747 aa12.51□□□□□ -0.41
USP48-213ENST00000529637 CFAP54Q96N23 3096 aa12.51□□□□□ -0.41
USP48-213ENST00000529637 WDFY3Q8IZQ1 3526 aa12.51□□□□□ -0.41
USP48-213ENST00000529637 NPIPB7O75200 414 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 OR2C1O95371 312 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 IFNA17P01571 189 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 SRFP11831 508 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 BCKDHBP21953 392 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 HSF1Q00613 529 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 IAH1Q2TAA2 248 aaPredicted RBP12.5□□□□□ -0.41
USP48-213ENST00000529637 FAM69BQ5VUD6 431 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 H1FNTQ75WM6 255 aaPredicted RBP12.5□□□□□ -0.41
USP48-213ENST00000529637 ZNF101Q8IZC7 436 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 DTWD2Q8NBA8 298 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 LSM5Q9Y4Y9 91 aaKnown RBP12.5□□□□□ -0.41
USP48-213ENST00000529637 URGCP-MRPS24S4R325 110 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 FER1L5A0AVI2 2057 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 SLC2A1P11166 492 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 TMEM50BP56557 158 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 FOXF1Q12946 379 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 GAMTQ14353 236 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 HMGN3Q15651 99 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 SLC26A10Q8NG04 563 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 OR1J1Q8NGS3 322 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 PHF3Q92576 2039 aaKnown RBP12.5□□□□□ -0.41
USP48-213ENST00000529637 S100PBPQ96BU1 408 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 SOX7Q9BT81 388 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 ST6GALNAC5Q9BVH7 336 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 CNTNAP3Q9BZ76 1288 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 GAR1Q9NY12 217 aaKnown RBP12.5□□□□□ -0.41
USP48-213ENST00000529637 RCL1Q9Y2P8 373 aaKnown RBP12.5□□□□□ -0.41
USP48-213ENST00000529637 TRBV11-1A0A0K0K1C0 115 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 A6NIZ1 184 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 VSTM2BA6NLU5 285 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 C10orf142B7Z368 130 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 TAAR5O14804 337 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 DAP3P51398 398 aaKnown RBP12.5□□□□□ -0.41
USP48-213ENST00000529637 RAP1BP61224 184 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 RAP1AP62834 184 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 SURF2Q15527 256 aaPredicted RBP12.5□□□□□ -0.41
USP48-213ENST00000529637 D2HGDHQ8N465 521 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 GPR61Q9BZJ8 451 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 TGIF2Q9GZN2 237 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 LPAR5Q9H1C0 372 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 SMOC1Q9H4F8 434 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 WFDC1Q9HC57 220 aa12.5□□□□□ -0.41
USP48-213ENST00000529637 ATXN7O15265 892 aaPredicted RBP12.49□□□□□ -0.41
USP48-213ENST00000529637 SYT7O43581 403 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 MPIG6BO95866 241 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 SCGB1D2O95969 90 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 GIMD1P0DJR0 217 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 S100A2P29034 98 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 EIF5AP63241 154 aaKnown RBP12.49□□□□□ -0.41
USP48-213ENST00000529637 OGFOD3Q6PK18 319 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 APCDD1LQ8NCL9 501 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 ZDHHC8Q9ULC8 765 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 MS4A18H0YCH9 400 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 CXCL1P09341 107 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 ANOS1P23352 680 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 PPP1CCP36873 323 aaKnown RBP12.49□□□□□ -0.41
USP48-213ENST00000529637 C17orf67Q0P5P2 114 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 MS4A18Q3C1V0 323 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 C17orf82Q86X59 251 aaPredicted RBP12.49□□□□□ -0.41
USP48-213ENST00000529637 METTL7AQ9H8H3 244 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 PPP4R1LQ9P1A2 415 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 MTCH2Q9Y6C9 303 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 H3BMH7 237 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 JTBO76095 146 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 SOD3P08294 240 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 ZNF41P51814 821 aaPredicted RBP12.49□□□□□ -0.41
USP48-213ENST00000529637 NKAIN3Q8N8D7 197 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 ASB10Q8WXI3 467 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 KCNJ16Q9NPI9 418 aa12.49□□□□□ -0.41
USP48-213ENST00000529637 SFTPDP35247 375 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 PTGER4P35408 488 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 ZNF84P51523 738 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 PEG10Q86TG7 708 aaKnown RBP12.48□□□□□ -0.41
USP48-213ENST00000529637 C1QL4Q86Z23 238 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 TMEM156Q8N614 296 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 C11orf40Q8WZ69 217 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 NTNG2Q96CW9 530 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 DDIT4LQ96D03 193 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 SLAMF6Q96DU3 332 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 ARHGAP5-AS1Q96IT6 56 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 OPA3Q9H6K4 179 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms