RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 INO80CQ6PI98 192 aaPredicted RBP17.86■□□□□ 0.45
VPS28-209ENST00000528142 MBD3L2Q8NHZ7 208 aaPredicted RBP17.86■□□□□ 0.45
VPS28-209ENST00000528142 MED30Q96HR3 178 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 GINS4Q9BRT9 223 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 OPA3Q9H6K4 179 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 ING3Q9NXR8 418 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 CRIM1Q9NZV1 1036 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 PYCARD-AS1I3L0S3 204 aa17.85■□□□□ 0.45
VPS28-209ENST00000528142 TNFSF13O75888 250 aa17.85■□□□□ 0.45
VPS28-209ENST00000528142 CST4P01036 141 aa17.85■□□□□ 0.45
VPS28-209ENST00000528142 OR11H7Q8NGC8 314 aa17.85■□□□□ 0.45
VPS28-209ENST00000528142 ABHD17AQ96GS6 310 aa17.85■□□□□ 0.45
VPS28-209ENST00000528142 Q96M66 194 aa17.85■□□□□ 0.45
VPS28-209ENST00000528142 GPR160Q9UJ42 338 aa17.85■□□□□ 0.45
VPS28-209ENST00000528142 IGKV1-12A0A0C4DH73 117 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 C1QTNF9BB2RNN3 333 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 CGAP01215 116 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 IGKV1D-12P01611 117 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 IL5P05113 134 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 C1QTNF9P0C862 333 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 HOXB1P14653 301 aaPredicted RBP17.84■□□□□ 0.45
VPS28-209ENST00000528142 ANXA7P20073 488 aaKnown RBP17.84■□□□□ 0.45
VPS28-209ENST00000528142 CPT2P23786 658 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 GNG2P59768 71 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 UBE2NP61088 152 aaKnown RBP17.84■□□□□ 0.45
VPS28-209ENST00000528142 PDZK1IP1Q13113 114 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 METTL11BQ5VVY1 283 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 RTL6Q6ICC9 239 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 GLDNQ6ZMI3 551 aaPredicted RBP17.84■□□□□ 0.45
VPS28-209ENST00000528142 PXT1Q8NFP0 134 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 LUZP4Q9P127 313 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 ATMQ13315 3056 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 BOD1L1Q8NFC6 3051 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 PTPRQQ9UMZ3 2332 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 CACNA1GO43497 2377 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 NAT1P18440 290 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 BLVRBP30043 206 aaPredicted RBP17.84■□□□□ 0.45
VPS28-209ENST00000528142 RSU1Q15404 277 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 SF3B4Q15427 424 aaKnown RBP eCLIP17.84■□□□□ 0.456e-8■■■■■ 27
VPS28-209ENST00000528142 RFPL4BQ6ZWI9 263 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 MYPOPQ86VE0 399 aaPredicted RBP17.84■□□□□ 0.45
VPS28-209ENST00000528142 CSNK2A3Q8NEV1 391 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 ST8SIA4Q92187 359 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 STARD4Q96DR4 205 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 PAPOLGQ9BWT3 736 aaKnown RBP17.84■□□□□ 0.45
VPS28-209ENST00000528142 FGF23Q9GZV9 251 aaPredicted RBP17.84■□□□□ 0.45
VPS28-209ENST00000528142 IL36GQ9NZH8 169 aa17.84■□□□□ 0.45
VPS28-209ENST00000528142 SPENQ96T58 3664 aaKnown RBP17.83■□□□□ 0.45
VPS28-209ENST00000528142 A0A1W2PR80 420 aa17.83■□□□□ 0.44
VPS28-209ENST00000528142 PQLC2LA1A4F0 135 aa17.83■□□□□ 0.44
VPS28-209ENST00000528142 ZNF780AO75290 641 aaPredicted RBP17.83■□□□□ 0.44
VPS28-209ENST00000528142 TOXO94900 526 aa17.83■□□□□ 0.44
VPS28-209ENST00000528142 HTR3BO95264 441 aa17.83■□□□□ 0.44
VPS28-209ENST00000528142 PLATP00750 562 aa17.83■□□□□ 0.44
VPS28-209ENST00000528142 AMY2AP04746 511 aa17.83■□□□□ 0.44
VPS28-209ENST00000528142 CELA3BP08861 270 aa17.83■□□□□ 0.44
VPS28-209ENST00000528142 MPZP25189 248 aa17.83■□□□□ 0.44
VPS28-209ENST00000528142 PRDX4Q13162 271 aa17.83■□□□□ 0.44
VPS28-209ENST00000528142 MAB21L1Q13394 359 aa17.83■□□□□ 0.44
VPS28-209ENST00000528142 MEF2DQ14814 521 aa17.83■□□□□ 0.44
VPS28-209ENST00000528142 TSC22D1Q15714 1073 aa17.83■□□□□ 0.44
VPS28-209ENST00000528142 TBC1D28Q2M2D7 210 aa17.83■□□□□ 0.44
VPS28-209ENST00000528142 OR52W1Q6IF63 320 aa17.83■□□□□ 0.44
VPS28-209ENST00000528142 SLC36A1Q7Z2H8 476 aa17.83■□□□□ 0.44
VPS28-209ENST00000528142 C1orf162Q8NEQ5 155 aaPredicted RBP17.83■□□□□ 0.44
VPS28-209ENST00000528142 SLC6A7Q99884 636 aa17.83■□□□□ 0.44
VPS28-209ENST00000528142 OCSTAMPQ9BR26 566 aa17.83■□□□□ 0.44
VPS28-209ENST00000528142 PECRQ9BY49 303 aa17.83■□□□□ 0.44
VPS28-209ENST00000528142 MOV10Q9HCE1 1003 aaKnown RBP17.83■□□□□ 0.44
VPS28-209ENST00000528142 IFT46Q9NQC8 304 aa17.83■□□□□ 0.44
VPS28-209ENST00000528142 CD300LBA8K4G0 201 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 TPOP07202 933 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 SULT1A3P0DMM9 295 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 SULT1A4P0DMN0 295 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 VSIG10L2P0DP72 767 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 NOXA1Q86UR1 476 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 BPIFB2Q8N4F0 458 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 WDR31Q8NA23 367 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 ZBTB8BQ8NAP8 495 aaPredicted RBP17.82■□□□□ 0.44
VPS28-209ENST00000528142 OR5L1Q8NGL2 311 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 HPSE2Q8WWQ2 592 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 SEC22CQ9BRL7 303 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 FAM215AQ9Y5M1 114 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 J3QW42 95 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 CSTBP04080 98 aaKnown RBP17.82■□□□□ 0.44
VPS28-209ENST00000528142 TBR1Q16650 682 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 KRTCAP3Q53RY4 240 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 RNASE10Q5GAN6 216 aaKnown RBP17.82■□□□□ 0.44
VPS28-209ENST00000528142 ZNF324BQ6AW86 544 aaPredicted RBP17.82■□□□□ 0.44
VPS28-209ENST00000528142 SEZ6L2Q6UXD5 910 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 IDO2Q6ZQW0 420 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 CALHM1Q8IU99 346 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 ZNF610Q8N9Z0 462 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 SNAPC3Q92966 411 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 DACT3Q96B18 629 aaPredicted RBP17.82■□□□□ 0.44
VPS28-209ENST00000528142 ZNF486Q96H40 463 aaPredicted RBP17.82■□□□□ 0.44
VPS28-209ENST00000528142 SLC25A21Q9BQT8 299 aaPredicted RBP17.82■□□□□ 0.44
VPS28-209ENST00000528142 SLC2A8Q9NY64 477 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 TP53TG5Q9Y2B4 290 aa17.82■□□□□ 0.44
VPS28-209ENST00000528142 SERPINE3A8MV23 424 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms