RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 A6NJ64 397 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 CDC14BO60729 498 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 MPIG6BO95866 241 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 PTH2RP49190 550 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 GNG3P63215 75 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 SORDQ00796 357 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 GPR176Q14439 515 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 TMEM255AQ5JRV8 349 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 ASCL4Q6XD76 172 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 CDH24Q86UP0 819 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 TMEM104Q8NE00 496 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 PXT1Q8NFP0 134 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 MICU1Q9BPX6 476 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 RTL8AQ9BWD3 113 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 TMEM59Q9BXS4 323 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 SLC22A4Q9H015 551 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 MYO7BQ6PIF6 2116 aa17.97■□□□□ 0.47
VPS28-208ENST00000527797 ABCD4O14678 606 aa17.97■□□□□ 0.47
VPS28-208ENST00000527797 CTDSPLO15194 276 aa17.97■□□□□ 0.47
VPS28-208ENST00000527797 ANGPTL7O43827 346 aa17.97■□□□□ 0.47
VPS28-208ENST00000527797 ZNF780AO75290 641 aaPredicted RBP17.97■□□□□ 0.47
VPS28-208ENST00000527797 SCGNO76038 276 aa17.97■□□□□ 0.47
VPS28-208ENST00000527797 KDM4BO94953 1096 aa17.97■□□□□ 0.47
VPS28-208ENST00000527797 HLA-DQB1P01920 261 aa17.97■□□□□ 0.47
VPS28-208ENST00000527797 ZNF250P15622 560 aa17.97■□□□□ 0.47
VPS28-208ENST00000527797 RSU1Q15404 277 aa17.97■□□□□ 0.47
VPS28-208ENST00000527797 TRIQKQ629K1 86 aa17.97■□□□□ 0.47
VPS28-208ENST00000527797 RAB12Q6IQ22 244 aa17.97■□□□□ 0.47
VPS28-208ENST00000527797 ZSCAN4Q8NAM6 433 aaPredicted RBP17.97■□□□□ 0.47
VPS28-208ENST00000527797 NUP37Q8NFH4 326 aa17.97■□□□□ 0.47
VPS28-208ENST00000527797 OR10K1Q8NGX5 313 aa17.97■□□□□ 0.47
VPS28-208ENST00000527797 URM1Q9BTM9 101 aaKnown RBP17.97■□□□□ 0.47
VPS28-208ENST00000527797 ADAT1Q9BUB4 502 aaKnown RBP17.97■□□□□ 0.47
VPS28-208ENST00000527797 BANF2Q9H503 90 aa17.97■□□□□ 0.47
VPS28-208ENST00000527797 TRAV18A0A075B6X5 111 aa17.96■□□□□ 0.47
VPS28-208ENST00000527797 B8ZZF3 427 aa17.96■□□□□ 0.47
VPS28-208ENST00000527797 SERPINA2P20848 420 aa17.96■□□□□ 0.47
VPS28-208ENST00000527797 HAAOP46952 286 aa17.96■□□□□ 0.47
VPS28-208ENST00000527797 BSPH1Q075Z2 132 aa17.96■□□□□ 0.47
VPS28-208ENST00000527797 SCN1BQ07699 218 aa17.96■□□□□ 0.47
VPS28-208ENST00000527797 OR8G1Q15617 311 aa17.96■□□□□ 0.47
VPS28-208ENST00000527797 RGS21Q2M5E4 152 aa17.96■□□□□ 0.47
VPS28-208ENST00000527797 VHLLQ6RSH7 139 aa17.96■□□□□ 0.47
VPS28-208ENST00000527797 CALHM1Q8IU99 346 aa17.96■□□□□ 0.47
VPS28-208ENST00000527797 ZNF611Q8N823 705 aa17.96■□□□□ 0.47
VPS28-208ENST00000527797 ACBD4Q8NC06 268 aa17.96■□□□□ 0.47
VPS28-208ENST00000527797 OR51F2Q8NH61 342 aa17.96■□□□□ 0.47
VPS28-208ENST00000527797 TMEM171Q8WVE6 324 aa17.96■□□□□ 0.47
VPS28-208ENST00000527797 THAP7Q9BT49 309 aaPredicted RBP17.96■□□□□ 0.47
VPS28-208ENST00000527797 PCDHB16Q9NRJ7 776 aa17.96■□□□□ 0.47
VPS28-208ENST00000527797 DUSP13Q9UII6 198 aa17.96■□□□□ 0.47
VPS28-208ENST00000527797 A0A1W2PP11 408 aa17.95■□□□□ 0.46
VPS28-208ENST00000527797 CSTBP04080 98 aaKnown RBP17.95■□□□□ 0.46
VPS28-208ENST00000527797 CHRM2P08172 466 aa17.95■□□□□ 0.46
VPS28-208ENST00000527797 MGMTP16455 207 aa17.95■□□□□ 0.46
VPS28-208ENST00000527797 GRNP28799 593 aaKnown RBP17.95■□□□□ 0.46
VPS28-208ENST00000527797 DEFA1P59665 94 aa17.95■□□□□ 0.46
VPS28-208ENST00000527797 DEFA3P59666 94 aa17.95■□□□□ 0.46
VPS28-208ENST00000527797 SNTB1Q13884 538 aaKnown RBP17.95■□□□□ 0.46
VPS28-208ENST00000527797 SLC22A25Q6T423 547 aa17.95■□□□□ 0.46
VPS28-208ENST00000527797 SLC25A26Q70HW3 274 aa17.95■□□□□ 0.46
VPS28-208ENST00000527797 ZNF573Q86YE8 665 aa17.95■□□□□ 0.46
VPS28-208ENST00000527797 C19orf18Q8NEA5 215 aa17.95■□□□□ 0.46
VPS28-208ENST00000527797 LINC01560Q8TB33 94 aa17.95■□□□□ 0.46
VPS28-208ENST00000527797 BBC3Q96PG8 261 aaPredicted RBP17.95■□□□□ 0.46
VPS28-208ENST00000527797 LPAR5Q9H1C0 372 aa17.95■□□□□ 0.46
VPS28-208ENST00000527797 ESRP2Q9H6T0 727 aaKnown RBP17.95■□□□□ 0.46
VPS28-208ENST00000527797 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.94■□□□□ 0.46
VPS28-208ENST00000527797 A0A1W2PQ09 198 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 GSTZ1O43708 216 aaPredicted RBP17.94■□□□□ 0.46
VPS28-208ENST00000527797 HTR3BO95264 441 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 IGHV3-13P01766 116 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 AGAP20933 346 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 INPP1P49441 399 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 KLF3P57682 345 aaPredicted RBP17.94■□□□□ 0.46
VPS28-208ENST00000527797 SELENOVP59797 346 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 RPS27AP62979 156 aaKnown RBP17.94■□□□□ 0.46
VPS28-208ENST00000527797 MRPS10P82664 201 aaKnown RBP17.94■□□□□ 0.46
VPS28-208ENST00000527797 MSMPQ1L6U9 139 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 MKXQ8IYA7 352 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 SAXO1Q8IYX7 474 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 ZNF808Q8N4W9 903 aaPredicted RBP17.94■□□□□ 0.46
VPS28-208ENST00000527797 NKIRAS2Q9NYR9 191 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 IL36GQ9NZH8 169 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 COL6A6A6NMZ7 2263 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 USP24Q9UPU5 2620 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 IGKV1-12A0A0C4DH73 117 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 RAB27BO00194 218 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 CYB5AP00167 134 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 IGKV1D-12P01611 117 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 VEGFCP49767 419 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 DGCR2P98153 550 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 MOGAT2Q3SYC2 334 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 NCMAPQ5T1S8 102 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 OR51T1Q8NGJ9 327 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 OR13G1Q8NGZ3 307 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 SMIM4Q8WVI0 70 aa17.94■□□□□ 0.46
VPS28-208ENST00000527797 NUDT16L1Q9BRJ7 211 aaKnown RBP17.94■□□□□ 0.46
VPS28-208ENST00000527797 CACNA1BQ00975 2339 aa17.93■□□□□ 0.46
VPS28-208ENST00000527797 TUBAL3A6NHL2 446 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms