RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 IL13RA1P78552 427 aa17.07■□□□□ 0.32
VPS28-206ENST00000526734 C12orf54Q6X4T0 127 aa17.07■□□□□ 0.32
VPS28-206ENST00000526734 ZNF788Q6ZQV5 615 aa17.07■□□□□ 0.32
VPS28-206ENST00000526734 FAM216BQ8N7L0 139 aa17.07■□□□□ 0.32
VPS28-206ENST00000526734 TMIGD2Q96BF3 282 aa17.07■□□□□ 0.32
VPS28-206ENST00000526734 C10orf35Q96D05 121 aa17.07■□□□□ 0.32
VPS28-206ENST00000526734 PCGF1Q9BSM1 259 aa17.07■□□□□ 0.32
VPS28-206ENST00000526734 ADI1Q9BV57 179 aa17.07■□□□□ 0.32
VPS28-206ENST00000526734 RASSF4Q9H2L5 321 aa17.07■□□□□ 0.32
VPS28-206ENST00000526734 ESM1Q9NQ30 184 aa17.07■□□□□ 0.32
VPS28-206ENST00000526734 GMPPBQ9Y5P6 360 aa17.07■□□□□ 0.32
VPS28-206ENST00000526734 DOCK11Q5JSL3 2073 aa17.07■□□□□ 0.32
VPS28-206ENST00000526734 TMEM89A2RUT3 159 aa17.06■□□□□ 0.32
VPS28-206ENST00000526734 OR2AT4A6NND4 320 aa17.06■□□□□ 0.32
VPS28-206ENST00000526734 SIGLEC5O15389 551 aa17.06■□□□□ 0.32
VPS28-206ENST00000526734 APOL3O95236 402 aa17.06■□□□□ 0.32
VPS28-206ENST00000526734 UBCP0CG48 685 aaKnown RBP17.06■□□□□ 0.32
VPS28-206ENST00000526734 MMP9P14780 707 aa17.06■□□□□ 0.32
VPS28-206ENST00000526734 PRTN3P24158 256 aa17.06■□□□□ 0.32
VPS28-206ENST00000526734 ISL1P61371 349 aa17.06■□□□□ 0.32
VPS28-206ENST00000526734 ZIK1Q3SY52 487 aaPredicted RBP17.06■□□□□ 0.32
VPS28-206ENST00000526734 HAGHLQ6PII5 290 aaPredicted RBP17.06■□□□□ 0.32
VPS28-206ENST00000526734 ZBTB49Q6ZSB9 765 aa17.06■□□□□ 0.32
VPS28-206ENST00000526734 EGFL6Q8IUX8 553 aa17.06■□□□□ 0.32
VPS28-206ENST00000526734 CMTM4Q8IZR5 234 aa17.06■□□□□ 0.32
VPS28-206ENST00000526734 KIR3DL3Q8N743 410 aa17.06■□□□□ 0.32
VPS28-206ENST00000526734 POC1AQ8NBT0 407 aa17.06■□□□□ 0.32
VPS28-206ENST00000526734 LY6G5BQ8NDX9 201 aa17.06■□□□□ 0.32
VPS28-206ENST00000526734 ANGPTL6Q8NI99 470 aa17.06■□□□□ 0.32
VPS28-206ENST00000526734 RORBQ92753 470 aa17.06■□□□□ 0.32
VPS28-206ENST00000526734 GCDHQ92947 438 aaPredicted RBP17.06■□□□□ 0.32
VPS28-206ENST00000526734 STMN2Q93045 179 aa17.06■□□□□ 0.32
VPS28-206ENST00000526734 RNFT2Q96EX2 444 aa17.06■□□□□ 0.32
VPS28-206ENST00000526734 Q96MT0 163 aa17.06■□□□□ 0.32
VPS28-206ENST00000526734 SIRPDQ9H106 197 aa17.06■□□□□ 0.32
VPS28-206ENST00000526734 WDR13Q9H1Z4 485 aa17.06■□□□□ 0.32
VPS28-206ENST00000526734 CNTD2Q9H8S5 307 aa17.06■□□□□ 0.32
VPS28-206ENST00000526734 DNAJC9-AS1A6NH13 148 aa17.05■□□□□ 0.32
VPS28-206ENST00000526734 SYT7O43581 403 aa17.05■□□□□ 0.32
VPS28-206ENST00000526734 GATBO75879 557 aaKnown RBP17.05■□□□□ 0.32
VPS28-206ENST00000526734 CAV3P56539 151 aa17.05■□□□□ 0.32
VPS28-206ENST00000526734 ZNF85Q03923 595 aa17.05■□□□□ 0.32
VPS28-206ENST00000526734 BAMBIQ13145 260 aa17.05■□□□□ 0.32
VPS28-206ENST00000526734 SMIM21Q3B7S5 101 aa17.05■□□□□ 0.32
VPS28-206ENST00000526734 CDONQ4KMG0 1287 aa17.05■□□□□ 0.32
VPS28-206ENST00000526734 BCL6BQ8N143 479 aaPredicted RBP17.05■□□□□ 0.32
VPS28-206ENST00000526734 C8orf46Q8TAG6 207 aa17.05■□□□□ 0.32
VPS28-206ENST00000526734 SEH1LQ96EE3 360 aa17.05■□□□□ 0.32
VPS28-206ENST00000526734 RDH12Q96NR8 316 aa17.05■□□□□ 0.32
VPS28-206ENST00000526734 GAFA1Q96PS6 74 aa17.05■□□□□ 0.32
VPS28-206ENST00000526734 MBOAT4Q96T53 435 aa17.05■□□□□ 0.32
VPS28-206ENST00000526734 PRDM13Q9H4Q3 707 aa17.05■□□□□ 0.32
VPS28-206ENST00000526734 GNG8Q9UK08 70 aa17.05■□□□□ 0.32
VPS28-206ENST00000526734 IGHV3OR16-10A0A075B7F0 116 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 DAPL1A0PJW8 107 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 PQLC2LA1A4F0 135 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 ANKRD61A6NGH8 418 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 NOS1APO75052 506 aaPredicted RBP17.04■□□□□ 0.32
VPS28-206ENST00000526734 FCN3O75636 299 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 RHBDL1O75783 438 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 ACAA1P09110 424 aaPredicted RBP17.04■□□□□ 0.32
VPS28-206ENST00000526734 AMY2BP19961 511 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 GMFBP60983 142 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 ACTA2P62736 377 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 ACTG2P63267 376 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 IKZF1Q13422 519 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 ZSCAN26Q16670 478 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 ACBD7Q8N6N7 88 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 OR5T2Q8NGG2 359 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 GATAD2BQ8WXI9 593 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 UBE2FQ969M7 185 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 SLC25A28Q96A46 364 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 ZNF48Q96MX3 618 aaPredicted RBP17.04■□□□□ 0.32
VPS28-206ENST00000526734 TBX15Q96SF7 602 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 DCTN5Q9BTE1 182 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 NOX4Q9NPH5 578 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 GPR173Q9NS66 373 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 SNTG1Q9NSN8 517 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 SLC25A10Q9UBX3 287 aaPredicted RBP17.04■□□□□ 0.32
VPS28-206ENST00000526734 SLC7A11Q9UPY5 501 aa17.04■□□□□ 0.32
VPS28-206ENST00000526734 A0A1B0GW55 424 aa17.03■□□□□ 0.32
VPS28-206ENST00000526734 J3QRE1 110 aa17.03■□□□□ 0.32
VPS28-206ENST00000526734 SLC16A6O15403 523 aa17.03■□□□□ 0.32
VPS28-206ENST00000526734 SERPINA3P01011 423 aa17.03■□□□□ 0.32
VPS28-206ENST00000526734 RNASE1P07998 156 aaKnown RBP17.03■□□□□ 0.32
VPS28-206ENST00000526734 DUX4L2P0CJ85 424 aa17.03■□□□□ 0.32
VPS28-206ENST00000526734 DUX4L3P0CJ86 424 aa17.03■□□□□ 0.32
VPS28-206ENST00000526734 DUX4L4P0CJ87 422 aa17.03■□□□□ 0.32
VPS28-206ENST00000526734 DUX4L5P0CJ88 424 aa17.03■□□□□ 0.32
VPS28-206ENST00000526734 DUX4L6P0CJ89 424 aa17.03■□□□□ 0.32
VPS28-206ENST00000526734 DUX4L7P0CJ90 424 aa17.03■□□□□ 0.32
VPS28-206ENST00000526734 MPZP25189 248 aa17.03■□□□□ 0.32
VPS28-206ENST00000526734 HAAOP46952 286 aa17.03■□□□□ 0.32
VPS28-206ENST00000526734 TMEM244Q5VVB8 128 aa17.03■□□□□ 0.32
VPS28-206ENST00000526734 FDX2Q6P4F2 183 aa17.03■□□□□ 0.32
VPS28-206ENST00000526734 DUX4L9Q6RFH8 374 aaPredicted RBP17.03■□□□□ 0.32
VPS28-206ENST00000526734 PP6455Q8WZ26 134 aa17.03■□□□□ 0.32
VPS28-206ENST00000526734 PKIBQ9C010 78 aa17.03■□□□□ 0.32
VPS28-206ENST00000526734 ACOXLQ9NUZ1 547 aa17.03■□□□□ 0.32
VPS28-206ENST00000526734 DUX4Q9UBX2 424 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms