RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 SERPINA5P05154 406 aa18.55■□□□□ 0.56
VPS28-205ENST00000526204 TMEM225BP0DP42 221 aa18.55■□□□□ 0.56
VPS28-205ENST00000526204 ICAM2P13598 275 aa18.55■□□□□ 0.56
VPS28-205ENST00000526204 RPS2P15880 293 aaKnown RBP18.55■□□□□ 0.56
VPS28-205ENST00000526204 ATF4P18848 351 aaPredicted RBP18.55■□□□□ 0.56
VPS28-205ENST00000526204 B3GALT5-AS1P59052 145 aa18.55■□□□□ 0.56
VPS28-205ENST00000526204 ZNF273Q14593 569 aa18.55■□□□□ 0.56
VPS28-205ENST00000526204 ZSCAN4Q8NAM6 433 aaPredicted RBP18.55■□□□□ 0.56
VPS28-205ENST00000526204 MAFAQ8NHW3 353 aaPredicted RBP18.55■□□□□ 0.56
VPS28-205ENST00000526204 METTL9Q9H1A3 318 aa18.55■□□□□ 0.56
VPS28-205ENST00000526204 ZNF701Q9NV72 531 aaPredicted RBP18.55■□□□□ 0.56
VPS28-205ENST00000526204 SLC39A1Q9NY26 324 aa18.55■□□□□ 0.56
VPS28-205ENST00000526204 SYNGR3O43761 229 aa18.55■□□□□ 0.56
VPS28-205ENST00000526204 CARD18P57730 90 aa18.55■□□□□ 0.56
VPS28-205ENST00000526204 SCRN3Q0VDG4 424 aa18.55■□□□□ 0.56
VPS28-205ENST00000526204 CPT1CQ8TCG5 803 aa18.55■□□□□ 0.56
VPS28-205ENST00000526204 MAFIPQ8WZ33 124 aa18.55■□□□□ 0.56
VPS28-205ENST00000526204 CYYR1Q96J86 154 aa18.55■□□□□ 0.56
VPS28-205ENST00000526204 DNAJB11Q9UBS4 358 aa18.55■□□□□ 0.56
VPS28-205ENST00000526204 PCDHB10Q9UN67 800 aa18.55■□□□□ 0.56
VPS28-205ENST00000526204 MEMO1Q9Y316 297 aa18.55■□□□□ 0.56
VPS28-205ENST00000526204 KCNAB3O43448 404 aa18.54■□□□□ 0.56
VPS28-205ENST00000526204 AIMP2Q13155 320 aaKnown RBP18.54■□□□□ 0.56
VPS28-205ENST00000526204 CNN3Q15417 329 aaKnown RBP18.54■□□□□ 0.56
VPS28-205ENST00000526204 ZNF468Q5VIY5 522 aaPredicted RBP18.54■□□□□ 0.56
VPS28-205ENST00000526204 PLXDC2Q6UX71 529 aa18.54■□□□□ 0.56
VPS28-205ENST00000526204 C6orf201Q7Z4U5 140 aa18.54■□□□□ 0.56
VPS28-205ENST00000526204 BPIFCQ8NFQ6 507 aa18.54■□□□□ 0.56
VPS28-205ENST00000526204 OR1F12Q8NHA8 337 aa18.54■□□□□ 0.56
VPS28-205ENST00000526204 RNF141Q8WVD5 230 aa18.54■□□□□ 0.56
VPS28-205ENST00000526204 RRNAD1Q96FB5 475 aaKnown RBP18.54■□□□□ 0.56
VPS28-205ENST00000526204 AQP10Q96PS8 301 aa18.54■□□□□ 0.56
VPS28-205ENST00000526204 GPR173Q9NS66 373 aa18.54■□□□□ 0.56
VPS28-205ENST00000526204 TMEM100Q9NV29 134 aa18.54■□□□□ 0.56
VPS28-205ENST00000526204 ZNF391Q9UJN7 358 aa18.54■□□□□ 0.56
VPS28-205ENST00000526204 CSTBP04080 98 aaKnown RBP18.53■□□□□ 0.56
VPS28-205ENST00000526204 TDGF1P13385 188 aa18.53■□□□□ 0.56
VPS28-205ENST00000526204 GABRR1P24046 479 aa18.53■□□□□ 0.56
VPS28-205ENST00000526204 ZNF528Q3MIS6 628 aa18.53■□□□□ 0.56
VPS28-205ENST00000526204 OR14L1PQ8NHC6 308 aa18.53■□□□□ 0.56
VPS28-205ENST00000526204 REEP6Q96HR9 211 aa18.53■□□□□ 0.56
VPS28-205ENST00000526204 CRLF2Q9HC73 371 aa18.53■□□□□ 0.56
VPS28-205ENST00000526204 TMEM38BQ9NVV0 291 aa18.53■□□□□ 0.56
VPS28-205ENST00000526204 MCTS1Q9ULC4 181 aaKnown RBP18.53■□□□□ 0.56
VPS28-205ENST00000526204 TNRC6BQ9UPQ9 1833 aaKnown RBP18.53■□□□□ 0.56
VPS28-205ENST00000526204 IFNA2P01563 188 aa18.53■□□□□ 0.56
VPS28-205ENST00000526204 RPUSD3Q6P087 351 aaKnown RBP18.53■□□□□ 0.56
VPS28-205ENST00000526204 POC1AQ8NBT0 407 aa18.53■□□□□ 0.56
VPS28-205ENST00000526204 ROBO4Q8WZ75 1007 aa18.53■□□□□ 0.56
VPS28-205ENST00000526204 CYTL1Q9NRR1 136 aa18.53■□□□□ 0.56
VPS28-205ENST00000526204 C1orf123Q9NWV4 160 aa18.53■□□□□ 0.56
VPS28-205ENST00000526204 HSF4Q9ULV5 492 aa18.53■□□□□ 0.56
VPS28-205ENST00000526204 MED12Q93074 2177 aa18.53■□□□□ 0.56
VPS28-205ENST00000526204 EML6Q6ZMW3 1958 aa18.52■□□□□ 0.56
VPS28-205ENST00000526204 NCOA6Q14686 2063 aaPredicted RBP18.52■□□□□ 0.56
VPS28-205ENST00000526204 CCDC187A0A096LP49 1063 aa18.52■□□□□ 0.56
VPS28-205ENST00000526204 MPTX1A8MV57 137 aa18.52■□□□□ 0.56
VPS28-205ENST00000526204 NUDT19A8MXV4 375 aa18.52■□□□□ 0.56
VPS28-205ENST00000526204 ACKR3P25106 362 aa18.52■□□□□ 0.56
VPS28-205ENST00000526204 IL15RAQ13261 267 aa18.52■□□□□ 0.56
VPS28-205ENST00000526204 RSU1Q15404 277 aa18.52■□□□□ 0.56
VPS28-205ENST00000526204 OR1S2Q8NGQ3 325 aa18.52■□□□□ 0.56
VPS28-205ENST00000526204 OR10C1Q96KK4 312 aa18.52■□□□□ 0.56
VPS28-205ENST00000526204 PRR13Q9NZ81 148 aa18.52■□□□□ 0.56
VPS28-205ENST00000526204 KNG1P01042 644 aa18.52■□□□□ 0.55
VPS28-205ENST00000526204 RBMXP38159 391 aaKnown RBP18.52■□□□□ 0.55
VPS28-205ENST00000526204 CHAF1BQ13112 559 aa18.52■□□□□ 0.55
VPS28-205ENST00000526204 STK11Q15831 433 aa18.52■□□□□ 0.55
VPS28-205ENST00000526204 YRDCQ86U90 279 aaKnown RBP18.52■□□□□ 0.55
VPS28-205ENST00000526204 ZNF775Q96BV0 537 aaPredicted RBP18.52■□□□□ 0.55
VPS28-205ENST00000526204 LRRC46Q96FV0 321 aa18.52■□□□□ 0.55
VPS28-205ENST00000526204 C12orf4Q9NQ89 552 aa18.52■□□□□ 0.55
VPS28-205ENST00000526204 ZC4H2Q9NQZ6 224 aa18.52■□□□□ 0.55
VPS28-205ENST00000526204 DECR2Q9NUI1 292 aa18.52■□□□□ 0.55
VPS28-205ENST00000526204 ASF1BQ9NVP2 202 aa18.52■□□□□ 0.55
VPS28-205ENST00000526204 OR5AC2Q9NZP5 309 aa18.52■□□□□ 0.55
VPS28-205ENST00000526204 ZNF716A6NP11 495 aa18.51■□□□□ 0.55
VPS28-205ENST00000526204 PATE3B3GLJ2 98 aa18.51■□□□□ 0.55
VPS28-205ENST00000526204 B4E171 279 aa18.51■□□□□ 0.55
VPS28-205ENST00000526204 TSPAN7P41732 249 aa18.51■□□□□ 0.55
VPS28-205ENST00000526204 NKAPLQ5M9Q1 402 aa18.51■□□□□ 0.55
VPS28-205ENST00000526204 ZNF774Q6NX45 483 aa18.51■□□□□ 0.55
VPS28-205ENST00000526204 LHFPL2Q6ZUX7 228 aa18.51■□□□□ 0.55
VPS28-205ENST00000526204 AAED1Q7RTV5 226 aa18.51■□□□□ 0.55
VPS28-205ENST00000526204 GGNQ86UU5 652 aa18.51■□□□□ 0.55
VPS28-205ENST00000526204 NARS2Q96I59 477 aaKnown RBP18.51■□□□□ 0.55
VPS28-205ENST00000526204 ZNF2Q9BSG1 426 aaPredicted RBP18.51■□□□□ 0.55
VPS28-205ENST00000526204 SLC6A15Q9H2J7 730 aa18.51■□□□□ 0.55
VPS28-205ENST00000526204 ANXA10Q9UJ72 324 aa18.51■□□□□ 0.55
VPS28-205ENST00000526204 OR6C6A6NF89 314 aa18.5■□□□□ 0.55
VPS28-205ENST00000526204 LCATP04180 440 aa18.5■□□□□ 0.55
VPS28-205ENST00000526204 CTSDP07339 412 aaPredicted RBP18.5■□□□□ 0.55
VPS28-205ENST00000526204 RBP2P50120 134 aa18.5■□□□□ 0.55
VPS28-205ENST00000526204 EIF5AP63241 154 aaKnown RBP18.5■□□□□ 0.55
VPS28-205ENST00000526204 DEFA5Q01523 94 aa18.5■□□□□ 0.55
VPS28-205ENST00000526204 RAB32Q13637 225 aa18.5■□□□□ 0.55
VPS28-205ENST00000526204 KRTAP27-1Q3LI81 207 aa18.5■□□□□ 0.55
VPS28-205ENST00000526204 SGPP2Q8IWX5 399 aa18.5■□□□□ 0.55
VPS28-205ENST00000526204 OR2AE1Q8NHA4 323 aa18.5■□□□□ 0.55
VPS28-205ENST00000526204 RGCCQ9H4X1 137 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms