RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 RASL11BQ9BPW5 248 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 CMSS1Q9BQ75 279 aaKnown RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 KLHDC3Q9BQ90 382 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM208Q9BTX3 173 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 DDA1Q9BW61 102 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 NUDT9Q9BW91 350 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TM2D1Q9BX74 207 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 CLEC7AQ9BXN2 247 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FGFBP2Q9BYJ0 223 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 KRTAP2-2Q9BYT5 123 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ULBP1Q9BZM6 244 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ACTR6Q9GZN1 396 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 COA1Q9GZY4 146 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 C20orf85Q9H1P6 137 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ARV1Q9H2C2 271 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 PARLQ9H300 379 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 BOLA2Q9H3K6 86 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TXNIPQ9H3M7 391 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 MAP1LC3AQ9H492 121 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 POMKQ9H5K3 350 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 RPF2Q9H7B2 306 aaKnown RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ISG20L2Q9H9L3 353 aaKnown RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 NMNAT1Q9HAN9 279 aaPredicted RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 UGT1A7Q9HAW7 530 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM27Q9HBJ8 222 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FGF22Q9HCT0 170 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM9BQ9NQ34 198 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 C12orf4Q9NQ89 552 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 IFT46Q9NQC8 304 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 BATF3Q9NR55 127 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FBXO8Q9NRD0 319 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM49BQ9NUQ9 324 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM206AQ9NX38 181 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TAS2R13Q9NYV9 303 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 CALYQ9NYX4 217 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TREM2Q9NZC2 230 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 GLTPQ9NZD2 209 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 DNAJC27Q9NZQ0 273 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR1A1Q9P1Q5 309 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 DPM3Q9P2X0 92 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 VPS29Q9UBQ0 182 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 DUX4Q9UBX2 424 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 SMPXQ9UHP9 88 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 CD84Q9UIB8 345 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ANXA10Q9UJ72 324 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 RAB26Q9ULW5 256 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 HHLA2Q9UM44 414 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 MOKQ9UQ07 419 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 PSG11Q9UQ72 335 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 VSIG4Q9Y279 399 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FARSAQ9Y285 508 aaKnown RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TP53TG1Q9Y2A0 90 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TP53TG5Q9Y2B4 290 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 SBDSQ9Y3A5 250 aaKnown RBP eCLIP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 KLF12Q9Y4X4 402 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 LSM5Q9Y4Y9 91 aaKnown RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR51B4Q9Y5P0 310 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 MRPS18BQ9Y676 258 aaKnown RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 KCNE3Q9Y6H6 103 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 V9GY05 133 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 MYO15BQ96JP2 1530 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 CKAP5Q14008 2032 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ATRXP46100 2492 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 MYH14Q7Z406 1995 aaKnown RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 COL5A2P05997 1499 aaPredicted RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ADAMTSL3P82987 1691 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 NPHP4O75161 1426 aaPredicted RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 PIK3C2GO75747 1445 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 YTHDC2Q9H6S0 1430 aaKnown RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 CPDO75976 1380 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SCN5AQ14524 2016 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 EVPLQ92817 2033 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ASTN1O14525 1302 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 NRCAMQ92823 1304 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF608Q9ULD9 1512 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CEP152O94986 1710 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SIGLEC1Q9BZZ2 1709 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGLV4-3A0A075B6K6 122 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGHV1OR15-1A0A075B7D0 117 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGHV3OR16-13A0A075B7E8 117 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGLV1-36A0A0B4J1U3 117 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGHV7-81A0A0B4J1V7 117 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TRAV8-2A0A0B4J237 113 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGHV3OR16-9A0A0B4J2B5 98 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGKV1D-13A0A0B4J2D9 117 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 A0A0G2JMP0 313 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 A0A0G2JRQ6 117 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TEX50A0A1B0GTY4 177 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 A0A1B0GV50 99 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PQLC2LA1A4F0 135 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR6C6A6NF89 314 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SMIM9A6NGZ8 99 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 METTL15A6NJ78 407 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 RPL37AP8A6NKH3 93 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM159BA6NKW6 160 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM183AA6NL82 134 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF729A6NN14 1252 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 NCBP2LA6PVI3 153 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CYSRT1A8MQ03 144 aa0.45□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms