RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 ZNF136P52737 540 aa11.74□□□□□ -0.53
TCOF1-213ENST00000514442 TBC1D28Q2M2D7 210 aa11.74□□□□□ -0.53
TCOF1-213ENST00000514442 DOK3Q7L591 496 aa11.74□□□□□ -0.53
TCOF1-213ENST00000514442 ANKRD37Q7Z713 158 aa11.74□□□□□ -0.53
TCOF1-213ENST00000514442 ZFP62Q8NB50 900 aaPredicted RBP11.74□□□□□ -0.53
TCOF1-213ENST00000514442 CXorf65A6NEN9 183 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 GPANK1O95872 356 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 BTCP35070 178 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 NOVA1P51513 510 aaKnown RBP11.73□□□□□ -0.53
TCOF1-213ENST00000514442 RPL7L1Q6DKI1 246 aaKnown RBP11.73□□□□□ -0.53
TCOF1-213ENST00000514442 PRSS35Q8N3Z0 413 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 GNRHR2Q96P88 292 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 PARP11Q9NR21 331 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 MRPL22Q9NWU5 206 aaKnown RBP11.73□□□□□ -0.53
TCOF1-213ENST00000514442 CLEC1BQ9P126 229 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 RCC2Q9P258 522 aaKnown RBP11.73□□□□□ -0.53
TCOF1-213ENST00000514442 HSPB2A8KAH6 182 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 NPIPB9F8W1W9 429 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 M0R135 149 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 PNPP00491 289 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 RPLP1P05386 114 aaKnown RBP11.73□□□□□ -0.53
TCOF1-213ENST00000514442 CST2P09228 141 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 ALOX5APP20292 161 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 HSPB2Q16082 182 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 ATPAF1Q5TC12 328 aaPredicted RBP11.73□□□□□ -0.53
TCOF1-213ENST00000514442 JMJD6Q6NYC1 403 aaPredicted RBP11.73□□□□□ -0.53
TCOF1-213ENST00000514442 DBX2Q6ZNG2 339 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 ZNF799Q96GE5 643 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 RAB33BQ9H082 229 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 B9D1Q9UPM9 204 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 CCDC187A0A096LP49 1063 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 CD96P40200 585 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 RPL29P47914 159 aaKnown RBP11.73□□□□□ -0.53
TCOF1-213ENST00000514442 EGR3Q06889 387 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 CST9LP1Q5W188 147 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 RBMXL1Q96E39 390 aaKnown RBP11.73□□□□□ -0.53
TCOF1-213ENST00000514442 ALKBH3Q96Q83 286 aaPredicted RBP11.73□□□□□ -0.53
TCOF1-213ENST00000514442 JAM3Q9BX67 310 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 CHST6Q9GZX3 395 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 SIGLEC7Q9Y286 467 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 GOLT1BQ9Y3E0 138 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 H7BYZ3 331 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 MPPED1O15442 326 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 WIPI1Q5MNZ9 446 aaPredicted RBP11.73□□□□□ -0.53
TCOF1-213ENST00000514442 CBLN3Q6UW01 205 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 GPA33Q99795 319 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 GPR87Q9BY21 358 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 MYO16Q9Y6X6 1858 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 PATE3B3GLJ2 98 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 ST8SIA3O43173 380 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 ZFPL1O95159 310 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 HPNP05981 417 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 AADACL3Q5VUY0 350 aa11.73□□□□□ -0.53
TCOF1-213ENST00000514442 TMEM272A0A1B0GTI8 110 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 PI3P19957 117 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 CDX1P47902 265 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-213ENST00000514442 NHLH2Q02577 135 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 SLC17A1Q14916 467 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 MICBQ29980 383 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 FAHD2BQ6P2I3 314 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-213ENST00000514442 DEFB124Q8NES8 71 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 RGP1Q92546 391 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-213ENST00000514442 FAHD2AQ96GK7 314 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 ZNF681Q96N22 645 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 MMP25Q9NPA2 562 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 C5orf49A4QMS7 147 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 HRKO00198 91 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 GPR137BO60478 399 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 PEBP1P30086 187 aaKnown RBP11.72□□□□□ -0.53
TCOF1-213ENST00000514442 VASH2Q86V25 355 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 OR52N5Q8NH56 324 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 MITD1Q8WV92 249 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 PIPOXQ9P0Z9 390 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 COLQQ9Y215 455 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-213ENST00000514442 TIMM10BQ9Y5J6 103 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 CBR3O75828 277 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 ZNF728P0DKX0 622 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 SPCS3P61009 180 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 HTD2P86397 168 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 RAB32Q13637 225 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 OCIAD1Q9NX40 245 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 P4HTMQ9NXG6 502 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 GNG12Q9UBI6 72 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 PLXNA1Q9UIW2 1896 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 HLA-HP01893 362 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 METTL15P1P0C7V9 234 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 GNB3P16520 340 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 DUSP1P28562 367 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 FMODQ06828 376 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 MYBPHQ13203 477 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 DTWD2Q8NBA8 298 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 NECAP1Q8NC96 275 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 OR51A4Q8NGJ6 313 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 EMG1Q92979 244 aaKnown RBP11.72□□□□□ -0.53
TCOF1-213ENST00000514442 PARD6AQ9NPB6 346 aa11.72□□□□□ -0.53
TCOF1-213ENST00000514442 KNTC1P50748 2209 aa11.71□□□□□ -0.53
TCOF1-213ENST00000514442 EFSO43281 561 aa11.71□□□□□ -0.53
TCOF1-213ENST00000514442 MT-CO3P00414 261 aa11.71□□□□□ -0.53
TCOF1-213ENST00000514442 EDDM3AQ14507 147 aa11.71□□□□□ -0.53
TCOF1-213ENST00000514442 TMEM123Q8N131 208 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms