RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 MYO5BQ9ULV0 1848 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 TROQ12816 1431 aaPredicted RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 RIC1Q4ADV7 1423 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 CD109Q6YHK3 1445 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 ANKARQ7Z5J8 1434 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 NSD3Q9BZ95 1437 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 ATP10BO94823 1461 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 PZPP20742 1482 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 ERVK-7P63135 1459 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 MTCL1Q9Y4B5 1905 aaKnown RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 CUX1P39880 1505 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 FBN1P35555 2871 aaKnown RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 NEURL4Q96JN8 1562 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 PPRC1Q5VV67 1664 aaKnown RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 IGLV4-69A0A075B6H9 119 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 TRBV11-1A0A0K0K1C0 115 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 A0A1B0GTI1 187 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 C20orf202A1L168 122 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 TMEM218A2RU14 115 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 MBLAC1A4D2B0 266 aaPredicted RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 A8MWP6 167 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 C1orf196B1AJZ1 125 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 C5orf58C9J3I9 102 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 C9J4A7 227 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 C9JVG2 144 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 K7ERU9 68 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 SLC16A4O15374 487 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 RGS16O15492 202 aaPredicted RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 ZNF208O43345 1280 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 KLRC4O43908 158 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 LYPLA1O75608 230 aaPredicted RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 GLSO94925 669 aaPredicted RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 TNFSF15O95150 251 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 BRI3O95415 125 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 CLDN9O95484 217 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 AP2A1O95782 977 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 TTC4O95801 387 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 LALBAP00709 142 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 SERPINA1P01009 418 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 PDYNP01213 254 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 IGHV2-5P01817 119 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 FGGP02679 453 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 FTH1P02794 183 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 SERPIND1P05546 499 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 OR10J4P0C629 311 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 OR8U8P0C7N1 319 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 MYL2P10916 166 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 ANXA3P12429 323 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 FOLR1P15328 257 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 SERPINA2P20848 420 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 TBXA2RP21731 343 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 IVDP26440 423 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 AKT2P31751 481 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 SSTR5P35346 364 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 IFNGR2P38484 337 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 CEACAM3P40198 252 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 AQP2P41181 271 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 CD200P41217 278 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 AKR1C3P42330 323 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 PTGFRP43088 359 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 QARSP47897 775 aaKnown RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 RFX3P48380 749 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 TTPAP49638 278 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 EVX1P49640 407 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 RORCP51449 518 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 CRYBA4P53673 196 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 CLDN18P56856 261 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 OR4D2P58180 307 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 LSM6P62312 80 aaKnown RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 SELENOTP62341 195 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 RPS4XP62701 263 aaKnown RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 ADARB1P78563 741 aaKnown RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 CDKL1Q00532 357 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 IFITM3Q01628 133 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 MYL5Q02045 173 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 GNA12Q03113 381 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 EMX1Q04741 257 aaPredicted RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 PRKCDQ05655 676 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 SIGLEC14Q08ET2 396 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 RAB31Q13636 194 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 KLF5Q13887 457 aaPredicted RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 SPA17Q15506 151 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 TAF9Q16594 264 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 POU2AF1Q16633 256 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 TATDN3Q17R31 274 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 XKR7Q5GH72 579 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 SPIN3Q5JUX0 258 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 RBM48Q5RL73 367 aaKnown RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 TPRG1LQ5T0D9 272 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 DCST2Q5T1A1 773 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 SYT6Q5T7P8 510 aaPredicted RBP1.38□□□□□ -2.19
NUP54-208ENST00000508604 SYPL2Q5VXT5 272 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 STEAP4Q687X5 459 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 ADNP2Q6IQ32 1131 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 RHBDD2Q6NTF9 364 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 PNCKQ6P2M8 343 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 TMEM220Q6QAJ8 160 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 UQCC3Q6UW78 93 aa1.38□□□□□ -2.19
NUP54-208ENST00000508604 WDR88Q6ZMY6 472 aa1.38□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms