RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 DMBX1Q8NFW5 382 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 EXTL1Q92935 676 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 NPAS1Q99742 590 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 KLHDC3Q9BQ90 382 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 OR2H1Q9GZK4 316 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 GHRLQ9UBU3 117 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 PPP1R3CQ9UQK1 317 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 FAM90A27PA6NNH2 459 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 TRAF3IP2O43734 574 aaPredicted RBP12.4□□□□□ -0.42
TCOF1-207ENST00000504761 LANCL1O43813 399 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 LMX1BO60663 402 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 ZNF205O95201 554 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 ZNF883P0CG24 379 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 ZNF17P17021 662 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 ATF4P18848 351 aaPredicted RBP12.4□□□□□ -0.42
TCOF1-207ENST00000504761 RPS23P62266 143 aaKnown RBP12.4□□□□□ -0.42
TCOF1-207ENST00000504761 DPPA2Q7Z7J5 298 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 ARHGEF39Q8N4T4 335 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 ABCA4P78363 2273 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 SOCS1O15524 211 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 SPINT2O43291 252 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 PGA4P0DJD7 388 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 PGA3P0DJD8 388 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 GGTLC2Q14390 218 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 CLINT1Q14677 625 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 SCCPDHQ8NBX0 429 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 ADPRHL1Q8NDY3 354 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 MS4A3Q96HJ5 214 aa12.4□□□□□ -0.42
TCOF1-207ENST00000504761 TICRRQ7Z2Z1 1910 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 C9orf172C9J069 976 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 H7C2Y5 167 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 FUT3P21217 361 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 GSK3AP49840 483 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 SGK3Q96BR1 496 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 UPRTQ96BW1 309 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 IMMP1LQ96LU5 166 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 TSNAXQ99598 290 aaKnown RBP12.39□□□□□ -0.43
TCOF1-207ENST00000504761 GON7Q9BXV9 100 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 SRXN1Q9BYN0 137 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 SNRNP200O75643 2136 aaKnown RBP12.39□□□□□ -0.43
TCOF1-207ENST00000504761 SSX5O60225 188 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 IFNA2P01563 188 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 S100A6P06703 90 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 HIST1H1DP16402 221 aaKnown RBP12.39□□□□□ -0.43
TCOF1-207ENST00000504761 SERPINF1P36955 418 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 CATR1Q13166 79 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 ARSJQ5FYB0 599 aaPredicted RBP12.39□□□□□ -0.43
TCOF1-207ENST00000504761 FDCSPQ8NFU4 85 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 SEH1LQ96EE3 360 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 PGLYRP3Q96LB9 341 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 EGLN1Q9GZT9 426 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 SLC26A1Q9H2B4 701 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 PLSCR3Q9NRY6 295 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 SP6Q3SY56 376 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 LPCAT3Q6P1A2 487 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 RFESDQ8TAC1 157 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 IGLV3-12A0A075B6K2 115 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 LRRC30A6NM36 301 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 ZNF239Q16600 458 aaKnown RBP12.39□□□□□ -0.43
TCOF1-207ENST00000504761 FAM122BQ7Z309 247 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 OR2AK2Q8NG84 335 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 OR10AD1Q8NGE0 317 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 TERB2Q8NHR7 220 aa12.39□□□□□ -0.43
TCOF1-207ENST00000504761 ESRP2Q9H6T0 727 aaKnown RBP12.39□□□□□ -0.43
TCOF1-207ENST00000504761 SULT1C2O00338 296 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 CDC14BO60729 498 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 TPT1P13693 172 aaKnown RBP12.38□□□□□ -0.43
TCOF1-207ENST00000504761 PTGER4P35408 488 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 PPP1CBP62140 327 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 ZFP36L1Q07352 338 aaKnown RBP12.38□□□□□ -0.43
TCOF1-207ENST00000504761 AKR1C8PQ5T2L2 129 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 OR6S1Q8NH40 331 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 ST8SIA4Q92187 359 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 RAB9BQ9NP90 201 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 CYB5R1Q9UHQ9 305 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 SERPINE3A8MV23 424 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 CST2P09228 141 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 RPS4XP62701 263 aaKnown RBP12.38□□□□□ -0.43
TCOF1-207ENST00000504761 RPL23AP62750 156 aaKnown RBP12.38□□□□□ -0.43
TCOF1-207ENST00000504761 SHEQ5VZ18 495 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 LGI3Q8N145 548 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 HRH4Q9H3N8 390 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 PRMT8Q9NR22 394 aaPredicted RBP12.38□□□□□ -0.43
TCOF1-207ENST00000504761 NDRG3Q9UGV2 375 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 SCN8AQ9UQD0 1980 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 A0A1W2PP11 408 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 TRIM64A6NGJ6 449 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 KLF7O75840 302 aaPredicted RBP12.38□□□□□ -0.43
TCOF1-207ENST00000504761 TSPAN15O95858 294 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 MPGP29372 298 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 PSG4Q00888 419 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 FBXW9Q5XUX1 488 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 SDSLQ96GA7 329 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 MAP6Q96JE9 813 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 TP53TG5Q9Y2B4 290 aa12.38□□□□□ -0.43
TCOF1-207ENST00000504761 IGKV1D-43A0A0B4J1Z2 117 aa12.37□□□□□ -0.43
TCOF1-207ENST00000504761 PLA2G10O15496 165 aa12.37□□□□□ -0.43
TCOF1-207ENST00000504761 ENSAO43768 121 aaKnown RBP12.37□□□□□ -0.43
TCOF1-207ENST00000504761 LUMP51884 338 aaPredicted RBP12.37□□□□□ -0.43
TCOF1-207ENST00000504761 PIGPP57054 158 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms