RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 PBOV1Q9GZY1 135 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 ST6GALNAC2Q9UJ37 374 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 STRAPQ9Y3F4 350 aaKnown RBP14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 IGHV3-64DA0A0J9YX35 117 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 E5RGE8 158 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 DFFBO76075 338 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 FUT7Q11130 342 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 FAM219AQ8IW50 185 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 PTPMT1Q8WUK0 201 aaPredicted RBP14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 PSMF1Q92530 271 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 LPAR3Q9UBY5 353 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 TNFSF18Q9UNG2 199 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 NSG2Q9Y328 171 aa14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 TIMM8BQ9Y5J9 83 aaPredicted RBP14.54□□□□□ -0.08
CCDC88B-209ENST00000494080 GPR137BO60478 399 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 MPZL1O95297 269 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 RECKO95980 971 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 RRADP55042 308 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 TAF9Q16594 264 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 MEGF10Q96KG7 1140 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 MENTQ9BUN1 341 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 DNAJB11Q9UBS4 358 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 PILRAQ9UKJ1 303 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 ARHGEF17Q96PE2 2063 aaPredicted RBP14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 BTBD17A6NE02 478 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 PATE3B3GLJ2 98 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 TK1P04183 234 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 APH1AQ96BI3 265 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 ZNF275Q9NSD4 429 aaPredicted RBP14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 PATJQ8NI35 1801 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 GATCO43716 136 aaKnown RBP14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 EFNB2P52799 333 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 SEMA6DQ8NFY4 1073 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 TM4SF19Q96DZ7 209 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 SAT2Q96F10 170 aaPredicted RBP14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 SLC17A5Q9NRA2 495 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 MRM2Q9UI43 246 aaKnown RBP14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 AMDHD2Q9Y303 409 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 NBASA2RRP1 2371 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 A8MXK9 166 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 DHHO43323 396 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 TNFSF15O95150 251 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 BPNT1O95861 308 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 SERPINA7P05543 415 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 B4GALT1P15291 398 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 SLC25A1P53007 311 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 CLDN15P56746 228 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 VHLLQ6RSH7 139 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 NECAP1Q8NC96 275 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 PRR13Q9NZ81 148 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 HDGFL3Q9Y3E1 203 aa14.53□□□□□ -0.08
CCDC88B-209ENST00000494080 OR6C6A6NF89 314 aa14.52□□□□□ -0.08
CCDC88B-209ENST00000494080 CCL4P13236 92 aa14.52□□□□□ -0.08
CCDC88B-209ENST00000494080 RAB5AP20339 215 aa14.52□□□□□ -0.08
CCDC88B-209ENST00000494080 OPRM1P35372 400 aa14.52□□□□□ -0.08
CCDC88B-209ENST00000494080 SUMO3P55854 103 aaPredicted RBP14.52□□□□□ -0.08
CCDC88B-209ENST00000494080 TMEM41BQ5BJD5 291 aa14.52□□□□□ -0.08
CCDC88B-209ENST00000494080 DHRS13Q6UX07 377 aa14.52□□□□□ -0.08
CCDC88B-209ENST00000494080 PRRX2Q99811 253 aa14.52□□□□□ -0.08
CCDC88B-209ENST00000494080 RAB33BQ9H082 229 aa14.52□□□□□ -0.08
CCDC88B-209ENST00000494080 OCIAD1Q9NX40 245 aa14.52□□□□□ -0.08
CCDC88B-209ENST00000494080 RAB27BO00194 218 aa14.52□□□□□ -0.09
CCDC88B-209ENST00000494080 EFEMP2O95967 443 aa14.52□□□□□ -0.09
CCDC88B-209ENST00000494080 IGKV1D-16P01601 117 aa14.52□□□□□ -0.09
CCDC88B-209ENST00000494080 NKX2-1P43699 371 aaPredicted RBP14.52□□□□□ -0.09
CCDC88B-209ENST00000494080 ZNF121P58317 390 aaPredicted RBP14.52□□□□□ -0.09
CCDC88B-209ENST00000494080 PRSS54Q6PEW0 395 aa14.52□□□□□ -0.09
CCDC88B-209ENST00000494080 KCNIP4Q6PIL6 250 aa14.52□□□□□ -0.09
CCDC88B-209ENST00000494080 TFAP2EQ6VUC0 442 aa14.52□□□□□ -0.09
CCDC88B-209ENST00000494080 C19orf12Q9NSK7 152 aa14.52□□□□□ -0.09
CCDC88B-209ENST00000494080 SLC39A9Q9NUM3 307 aa14.52□□□□□ -0.09
CCDC88B-209ENST00000494080 FRRS1LQ9P0K9 344 aa14.52□□□□□ -0.09
CCDC88B-209ENST00000494080 EIF3GO75821 320 aaKnown RBP eCLIP14.52□□□□□ -0.09
CCDC88B-209ENST00000494080 CBR3O75828 277 aa14.52□□□□□ -0.09
CCDC88B-209ENST00000494080 MPLP40238 635 aa14.52□□□□□ -0.09
CCDC88B-209ENST00000494080 WIPI1Q5MNZ9 446 aaPredicted RBP14.52□□□□□ -0.09
CCDC88B-209ENST00000494080 TMEM178AQ8NBL3 297 aa14.52□□□□□ -0.09
CCDC88B-209ENST00000494080 SDSLQ96GA7 329 aa14.52□□□□□ -0.09
CCDC88B-209ENST00000494080 ZNF426Q9BUY5 554 aa14.52□□□□□ -0.09
CCDC88B-209ENST00000494080 ZCCHC4Q9H5U6 513 aa14.52□□□□□ -0.09
CCDC88B-209ENST00000494080 SCAND1P57086 179 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 LCN15Q6UWW0 184 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 ARRDC1Q8N5I2 433 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 SEH1LQ96EE3 360 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 RAC2P15153 192 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 D2HGDHQ8N465 521 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 DTWD2Q8NBA8 298 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 VWCEQ96DN2 955 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 SLC25A38Q96DW6 304 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 PIK3IP1Q96FE7 263 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 PGLYRP3Q96LB9 341 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 NRIP2Q9BQI9 281 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 FBXL17Q9UF56 701 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 H7BYZ3 331 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 HOXB9P17482 250 aaPredicted RBP14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 DUSP1P28562 367 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 PCK2Q16822 640 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 ATG4DQ86TL0 474 aaPredicted RBP14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 SLC35B3Q9H1N7 401 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 A0A087X0M5 115 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms