RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 HHATQ5VTY9 493 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 OTPQ5XKR4 325 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 DNAAF3Q8N9W5 541 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 OR51Q1Q8NH59 317 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 OR10G6Q8NH81 332 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 DNAJB3Q8WWF6 145 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 CDS1Q92903 461 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 TAAR1Q96RJ0 339 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 TMEM243Q9BU79 118 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 NXF2Q9GZY0 626 aaKnown RBP3.27□□□□□ -1.89
VPS13A-212ENST00000493341 ING2Q9H160 280 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 ANXA10Q9UJ72 324 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 TFR2Q9UP52 801 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 YEATS2Q9ULM3 1422 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 MAST1Q9Y2H9 1570 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 ELP1O95163 1332 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 COL5A2P05997 1499 aaPredicted RBP3.27□□□□□ -1.89
VPS13A-212ENST00000493341 C3P01024 1663 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 VPS8Q8N3P4 1428 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 A0A0A6YYH2 397 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 GOLGA6L10A6NI86 522 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 A6NJ64 397 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 CDIPTO14735 213 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 LIN7AO14910 233 aaPredicted RBP3.26□□□□□ -1.89
VPS13A-212ENST00000493341 RAB38P57729 211 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 KDSRQ06136 332 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 INCA1Q0VD86 236 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 ITGB3BPQ13352 177 aaPredicted RBP3.26□□□□□ -1.89
VPS13A-212ENST00000493341 EXOC3L4Q17RC7 722 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 CDKL4Q5MAI5 379 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 RBM48Q5RL73 367 aaKnown RBP3.26□□□□□ -1.89
VPS13A-212ENST00000493341 IDNKQ5T6J7 187 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 TMEM236Q5W0B7 351 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 C11orf42Q8N5U0 333 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 C19orf18Q8NEA5 215 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 OR10G4Q8NGN3 311 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 OR1S1Q8NH92 325 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 RXFP4Q8TDU9 374 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 FLYWCH2Q96CP2 140 aaKnown RBP3.26□□□□□ -1.89
VPS13A-212ENST00000493341 NANOGQ9H9S0 305 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 RDH14Q9HBH5 336 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 C12orf4Q9NQ89 552 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 IL17CQ9P0M4 197 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 MAP3K15Q6ZN16 1313 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 CROCC2H7BZ55 1655 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 ATP7AQ04656 1500 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 SYCP2Q9BX26 1530 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 RTEL1-TNFRSF6BF6WH68 1400 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 TRAV8-6A0A0B4J262 113 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 RSPH10B2B2RC85 870 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 NDUFC2-KCTD14E9PQ53 114 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 TOX3O15405 576 aaPredicted RBP3.26□□□□□ -1.89
VPS13A-212ENST00000493341 RSPH10BP0C881 870 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 PAX6P26367 422 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 RPS9P46781 194 aaKnown RBP3.26□□□□□ -1.89
VPS13A-212ENST00000493341 BLVRAP53004 296 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 EMP2P54851 167 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 OR10A3P58181 314 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 GNB2P62879 340 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 ARG2P78540 354 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 IFITM3Q01628 133 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 CD164Q04900 197 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 MADCAM1Q13477 382 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 TTC32Q5I0X7 151 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 KDM4DQ6B0I6 523 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 FAM151BQ6UXP7 276 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 RTL4Q6ZR62 310 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 OR13G1Q8NGZ3 307 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 ABHD3Q8WU67 409 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 IMMP1LQ96LU5 166 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 HSD17B10Q99714 261 aaKnown RBP3.26□□□□□ -1.89
VPS13A-212ENST00000493341 NRTNQ99748 197 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 RPS10P5Q9NQ39 176 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 SIGLEC7Q9Y286 467 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 USH1CQ9Y6N9 552 aa3.26□□□□□ -1.89
VPS13A-212ENST00000493341 MBD5Q9P267 1494 aa3.25□□□□□ -1.89
VPS13A-212ENST00000493341 ZNF142P52746 1687 aaPredicted RBP3.25□□□□□ -1.89
VPS13A-212ENST00000493341 EIF2AK4Q9P2K8 1649 aaKnown RBP3.25□□□□□ -1.89
VPS13A-212ENST00000493341 TRAPPC8Q9Y2L5 1435 aa3.25□□□□□ -1.89
VPS13A-212ENST00000493341 PIKFYVEQ9Y2I7 2098 aa3.25□□□□□ -1.89
VPS13A-212ENST00000493341 HAT1O14929 419 aa3.25□□□□□ -1.89
VPS13A-212ENST00000493341 CXCR1P25024 350 aa3.25□□□□□ -1.89
VPS13A-212ENST00000493341 RPA3P35244 121 aaPredicted RBP3.25□□□□□ -1.89
VPS13A-212ENST00000493341 APLNRP35414 380 aa3.25□□□□□ -1.89
VPS13A-212ENST00000493341 DRD3P35462 400 aa3.25□□□□□ -1.89
VPS13A-212ENST00000493341 POLR2IP36954 125 aaKnown RBP3.25□□□□□ -1.89
VPS13A-212ENST00000493341 TAS2R31P59538 309 aa3.25□□□□□ -1.89
VPS13A-212ENST00000493341 LAMTOR4Q0VGL1 99 aa3.25□□□□□ -1.89
VPS13A-212ENST00000493341 CDNFQ49AH0 187 aa3.25□□□□□ -1.89
VPS13A-212ENST00000493341 AVPI1Q5T686 147 aa3.25□□□□□ -1.89
VPS13A-212ENST00000493341 OPN5Q6U736 354 aa3.25□□□□□ -1.89
VPS13A-212ENST00000493341 GAPTQ8N292 157 aa3.25□□□□□ -1.89
VPS13A-212ENST00000493341 ZNF565Q8N9K5 539 aa3.25□□□□□ -1.89
VPS13A-212ENST00000493341 OR5AK3PQ8NH89 298 aa3.25□□□□□ -1.89
VPS13A-212ENST00000493341 LINC01006Q8NI28 216 aa3.25□□□□□ -1.89
VPS13A-212ENST00000493341 C8orf76Q96K31 380 aa3.25□□□□□ -1.89
VPS13A-212ENST00000493341 BMFQ96LC9 184 aa3.25□□□□□ -1.89
VPS13A-212ENST00000493341 TMED9Q9BVK6 235 aa3.25□□□□□ -1.89
VPS13A-212ENST00000493341 SFXN3Q9BWM7 321 aa3.25□□□□□ -1.89
VPS13A-212ENST00000493341 ABCB9Q9NP78 766 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms