RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 PPP1R1AQ13522 171 aa18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 NUFIP2Q7Z417 695 aaKnown RBP18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 ARRDC1Q8N5I2 433 aa18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 BORCS8Q96FH0 119 aa18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 CLEC4MQ9H2X3 399 aaPredicted RBP18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 ASCL3Q9NQ33 180 aa18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 MCRIP1C9JLW8 97 aa18.3■□□□□ 0.52
CCDC88B-208ENST00000492980 HLA-HP01893 362 aa18.3■□□□□ 0.52
CCDC88B-208ENST00000492980 AMY2BP19961 511 aa18.3■□□□□ 0.52
CCDC88B-208ENST00000492980 SRSF6Q13247 344 aaKnown RBP18.3■□□□□ 0.52
CCDC88B-208ENST00000492980 ARL6IP1Q15041 203 aa18.3■□□□□ 0.52
CCDC88B-208ENST00000492980 ASCL4Q6XD76 172 aa18.3■□□□□ 0.52
CCDC88B-208ENST00000492980 MCEMP1Q8IX19 187 aa18.3■□□□□ 0.52
CCDC88B-208ENST00000492980 ADAD2Q8NCV1 583 aaKnown RBP18.3■□□□□ 0.52
CCDC88B-208ENST00000492980 SPRR3Q9UBC9 169 aa18.3■□□□□ 0.52
CCDC88B-208ENST00000492980 NOP16Q9Y3C1 178 aaKnown RBP18.3■□□□□ 0.52
CCDC88B-208ENST00000492980 ZNF503-AS2A6NEH8 195 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 HMSDA8MTL9 139 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 L7N2F9 121 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 M0R233 179 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 CA11O75493 328 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 PLATP00750 562 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 GABRR1P24046 479 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 SEC61A1P61619 476 aaKnown RBP18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 OPCMLQ14982 345 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 FAHD2BQ6P2I3 314 aaPredicted RBP18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 TMPRSS7Q7RTY8 843 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 OR5M8Q8NGP6 311 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 OR5H2Q8NGV7 314 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 TERB2Q8NHR7 220 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 MARCH1Q8TCQ1 289 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 FAHD2AQ96GK7 314 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 WDYHV1Q96HA8 205 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 LDAHQ9H6V9 325 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 ZNF816-ZNF321PA0A0X1KG74 233 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 C9orf170A2RU37 121 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 NKX2-8O15522 239 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 SNAPC5O75971 98 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 HTR3BO95264 441 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 RSU1Q15404 277 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 C6orf201Q7Z4U5 140 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 TMEM178AQ8NBL3 297 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 ST6GALNAC5Q9BVH7 336 aa18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 ZNF230Q9UIE0 474 aaPredicted RBP18.29■□□□□ 0.52
CCDC88B-208ENST00000492980 ARHGAP21Q5T5U3 1957 aa18.28■□□□□ 0.52
CCDC88B-208ENST00000492980 TRGV5A0A0B4J1U4 118 aa18.28■□□□□ 0.52
CCDC88B-208ENST00000492980 EFSO43281 561 aa18.28■□□□□ 0.52
CCDC88B-208ENST00000492980 SNU13P55769 128 aaKnown RBP18.28■□□□□ 0.52
CCDC88B-208ENST00000492980 ZDHHC11Q9H8X9 412 aa18.28■□□□□ 0.52
CCDC88B-208ENST00000492980 CSAG2Q9Y5P2 127 aa18.28■□□□□ 0.52
CCDC88B-208ENST00000492980 LRP3O75074 770 aa18.28■□□□□ 0.52
CCDC88B-208ENST00000492980 CSTBP04080 98 aaKnown RBP18.28■□□□□ 0.52
CCDC88B-208ENST00000492980 COX5BP10606 129 aa18.28■□□□□ 0.52
CCDC88B-208ENST00000492980 C4BPBP20851 252 aa18.28■□□□□ 0.52
CCDC88B-208ENST00000492980 TNFSF10P50591 281 aa18.28■□□□□ 0.52
CCDC88B-208ENST00000492980 FUT6P51993 359 aa18.28■□□□□ 0.52
CCDC88B-208ENST00000492980 EXOSC2Q13868 293 aaKnown RBP18.28■□□□□ 0.52
CCDC88B-208ENST00000492980 PPA1Q15181 289 aa18.28■□□□□ 0.52
CCDC88B-208ENST00000492980 RTL6Q6ICC9 239 aa18.28■□□□□ 0.52
CCDC88B-208ENST00000492980 MOB3CQ70IA8 216 aa18.28■□□□□ 0.52
CCDC88B-208ENST00000492980 MITD1Q8WV92 249 aa18.28■□□□□ 0.52
CCDC88B-208ENST00000492980 KCNN3Q9UGI6 736 aa18.28■□□□□ 0.52
CCDC88B-208ENST00000492980 FIGNL2A6NMB9 653 aa18.27■□□□□ 0.52
CCDC88B-208ENST00000492980 CEACAM18A8MTB9 384 aa18.27■□□□□ 0.52
CCDC88B-208ENST00000492980 ARPC5O15511 151 aa18.27■□□□□ 0.52
CCDC88B-208ENST00000492980 CFDP00746 253 aaPredicted RBP18.27■□□□□ 0.52
CCDC88B-208ENST00000492980 NUBP1P53384 320 aa18.27■□□□□ 0.52
CCDC88B-208ENST00000492980 IL13RA1P78552 427 aa18.27■□□□□ 0.52
CCDC88B-208ENST00000492980 IKZF1Q13422 519 aa18.27■□□□□ 0.52
CCDC88B-208ENST00000492980 PLCXD3Q63HM9 321 aa18.27■□□□□ 0.52
CCDC88B-208ENST00000492980 SIGIRRQ6IA17 410 aa18.27■□□□□ 0.52
CCDC88B-208ENST00000492980 LPCAT3Q6P1A2 487 aa18.27■□□□□ 0.52
CCDC88B-208ENST00000492980 CSNK2A3Q8NEV1 391 aa18.27■□□□□ 0.52
CCDC88B-208ENST00000492980 MAFIPQ8WZ33 124 aa18.27■□□□□ 0.52
CCDC88B-208ENST00000492980 PIGCQ92535 297 aa18.27■□□□□ 0.52
CCDC88B-208ENST00000492980 SLC7A11Q9UPY5 501 aa18.27■□□□□ 0.52
CCDC88B-208ENST00000492980 FXYD6-FXYD2A0A087WZ82 144 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 IGKV1-12A0A0C4DH73 117 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 IFNA7P01567 189 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 IGKV1D-12P01611 117 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 PPP3CBP16298 524 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 AKR1C4P17516 323 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 ATP1B3P54709 279 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 TAS2R46P59540 309 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 SORDQ00796 357 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 SRSF4Q08170 494 aaKnown RBP18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 CAMK2BQ13554 666 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 NKAPLQ5M9Q1 402 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 TECTBQ96PL2 329 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 FXYD6Q9H0Q3 95 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 PLEKHJ1Q9NW61 149 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 PRSS50Q9UI38 385 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 TRAV14DV4A0A0A6YYC5 116 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 C5orf49A4QMS7 147 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 ZNHIT1O43257 154 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 SERPINA5P05154 406 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 CD79AP11912 226 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 CCL2P13500 99 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 CCNOP22674 350 aa18.26■□□□□ 0.51
CCDC88B-208ENST00000492980 TAS2R31P59538 309 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms