RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 ZFPL1O95159 310 aa13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 SERPINA3P01011 423 aa13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 GYPAP02724 150 aa13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 HNF1AP20823 631 aa13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 VHLP40337 213 aa13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 GTF2A1P52655 376 aaPredicted RBP13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 CDK5R1Q15078 307 aa13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 UBE2V2Q15819 145 aa13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 CHRFAM7AQ494W8 412 aa13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 CCDC58Q4VC31 144 aa13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 FAM120AOSQ5T036 256 aa13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 HAGHLQ6PII5 290 aaPredicted RBP13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 LYPD2Q6UXB3 125 aa13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 FAM90A1Q86YD7 464 aa13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 ZNF573Q86YE8 665 aa13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 OR51A4Q8NGJ6 313 aa13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 TRMT10AQ8TBZ6 339 aaKnown RBP13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 AQP3Q92482 292 aa13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 FGGYQ96C11 551 aa13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 ADAT3Q96EY9 351 aaPredicted RBP13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 TECTBQ96PL2 329 aa13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 PDCD1LG2Q9BQ51 273 aa13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 SSBP3Q9BWW4 388 aaPredicted RBP13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 ERVK-18Q9QC07 812 aa13.6□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 MALRD1Q5VYJ5 2156 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 A0A0G2JMP0 313 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 A0A0X1KG70 313 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 KIAA1324LA8MWY0 1029 aaPredicted RBP13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 J3QT63 122 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 AKR7A2O43488 359 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 NDUFA2O43678 99 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 RHBDL1O75783 438 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 MUC1P15941 1255 aaPredicted RBP13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 ZFP36P26651 326 aaKnown RBP13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 HAAOP46952 286 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 PITPNBP48739 271 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 GMFBP60983 142 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 GNB2P62879 340 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 CNN3Q15417 329 aaKnown RBP13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 MICBQ29980 383 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 XAF1Q6GPH4 301 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 RPL22L1Q6P5R6 122 aaKnown RBP13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 IL17RELQ6ZVW7 336 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 OR4M2Q8NGB6 313 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 ZNF671Q8TAW3 534 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 RPS4Y2Q8TD47 263 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 NPRL2Q8WTW4 380 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 BEX2Q9BXY8 128 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 BABAM2Q9NXR7 383 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 SCN3BQ9NY72 215 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 DNAJB11Q9UBS4 358 aa13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 POLR3KQ9Y2Y1 108 aaPredicted RBP13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.59□□□□□ -0.236e-48■■■■□ 22.1
MSH5-SAPCD1-206ENST00000491552 FN1P02751 2386 aaKnown RBP13.59□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 NSD1Q96L73 2696 aaPredicted RBP13.58□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 TLN2Q9Y4G6 2542 aa13.58□□□□□ -0.23
MSH5-SAPCD1-206ENST00000491552 PPIAL4CA0A0B4J2A2 164 aa13.58□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 FAM230AA0A1W2PPH8 454 aa13.58□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 TNFRSF13BO14836 293 aaPredicted RBP13.58□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 MYL12BO14950 172 aa13.58□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 PHF1O43189 567 aaPredicted RBP13.58□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 ADAM20O43506 726 aa13.58□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 GATA3P23771 443 aa13.58□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 C21orf33P30042 268 aaPredicted RBP13.58□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 FUT6P51993 359 aa13.58□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 DCAF12L2Q5VW00 463 aa13.58□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 UTS2BQ765I0 119 aa13.58□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 GATAD2BQ8WXI9 593 aa13.58□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 MYDGFQ969H8 173 aa13.58□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 C12orf43Q96C57 262 aaKnown RBP13.58□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 SEH1LQ96EE3 360 aa13.58□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 CTSZQ9UBR2 303 aa13.58□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 OR5V1Q9UGF6 321 aa13.58□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 RAB26Q9ULW5 256 aa13.58□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 POLDIP2Q9Y2S7 368 aa13.58□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 PTGES3LE9PB15 166 aa13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 OGG1O15527 345 aa13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 SYNGR1O43759 233 aa13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 LALBAP00709 142 aa13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 CDK1P06493 297 aa13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 ATF1P18846 271 aa13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 GLRA1P23415 457 aa13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 NPY4RP50391 375 aa13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 STUMQ69YW2 141 aa13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 FAHD2BQ6P2I3 314 aaPredicted RBP13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 ZNF841Q6ZN19 808 aa13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 POC1AQ8NBT0 407 aa13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 ZNF485Q8NCK3 441 aa13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 TSEN15Q8WW01 171 aaKnown RBP13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 SMIM19Q96E16 107 aa13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 BORCS8Q96FH0 119 aa13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 FAHD2AQ96GK7 314 aa13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 POM121Q96HA1 1249 aa13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 CNBD2Q96M20 576 aa13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 PKIBQ9C010 78 aa13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 WDR13Q9H1Z4 485 aa13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 KAAG1Q9UBP8 84 aa13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 CLN8Q9UBY8 286 aa13.57□□□□□ -0.24
MSH5-SAPCD1-206ENST00000491552 DHDHQ9UQ10 334 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms