RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 EGLN3Q9H6Z9 239 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 BABAM2Q9NXR7 383 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 PSG11Q9UQ72 335 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 SPENQ96T58 3664 aaKnown RBP4.53□□□□□ -1.68
CCDC39-205ENST00000485055 USP9XQ93008 2570 aaPredicted RBP4.53□□□□□ -1.68
CCDC39-205ENST00000485055 FLNCQ14315 2725 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 ZGRF1Q86YA3 2104 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 OVOL3O00110 214 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 UPK1AO00322 258 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 CXCR6O00574 342 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 EIF4E2O60573 245 aaKnown RBP4.53□□□□□ -1.68
CCDC39-205ENST00000485055 MPZL1O95297 269 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 JUNP05412 331 aaKnown RBP4.53□□□□□ -1.68
CCDC39-205ENST00000485055 IL3P08700 152 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 GP9P14770 177 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 UQCRBP14927 111 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 SSTR4P31391 388 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 PLGLB1Q02325 96 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 EMX2Q04743 252 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 SRYQ05066 204 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 SLC22A6Q4U2R8 563 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 SPIN3Q5JUX0 258 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 WDR25Q64LD2 544 aaPredicted RBP4.53□□□□□ -1.68
CCDC39-205ENST00000485055 FAHD2BQ6P2I3 314 aaPredicted RBP4.53□□□□□ -1.68
CCDC39-205ENST00000485055 LINC00336Q6ZUF6 198 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 ACOT7LQ6ZUV0 252 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 HDDC2Q7Z4H3 204 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 TMEM144Q7Z5S9 345 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 CMTM4Q8IZR5 234 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 PXT1Q8NFP0 134 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 OR52R1Q8NGF1 315 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 PLPPR1Q8TBJ4 325 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 TAMM41Q96BW9 452 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 FAHD2AQ96GK7 314 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 ZNF2Q9BSG1 426 aaPredicted RBP4.53□□□□□ -1.68
CCDC39-205ENST00000485055 GLIPR2Q9H4G4 154 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 FAM30AQ9NZY2 134 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 B3GAT1Q9P2W7 334 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 RAP2CQ9Y3L5 183 aa4.53□□□□□ -1.68
CCDC39-205ENST00000485055 USP9YO00507 2555 aaPredicted RBP4.53□□□□□ -1.68
CCDC39-205ENST00000485055 DISC1C4P0D8 188 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 G3V3Y1 287 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 BET1O15155 118 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 UBDO15205 165 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 RGS16O15492 202 aaPredicted RBP4.52□□□□□ -1.69
CCDC39-205ENST00000485055 HOXA3O43365 443 aaPredicted RBP4.52□□□□□ -1.69
CCDC39-205ENST00000485055 UGT2B11O75310 529 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 TNFSF13O75888 250 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 AQP8O94778 261 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 WNT11O96014 354 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 HLA-HP01893 362 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 LCKP06239 509 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 CDK1P06493 297 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 GATA3P23771 443 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 APOBEC1P41238 236 aaKnown RBP4.52□□□□□ -1.69
CCDC39-205ENST00000485055 EIF1P41567 113 aaKnown RBP4.52□□□□□ -1.69
CCDC39-205ENST00000485055 DNASE1L1P49184 302 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 BSXQ3C1V8 233 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 FAHD1Q6P587 224 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 ZNF561Q8N587 486 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 NANOGP1Q8N7R0 232 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 OR5B3Q8NH48 314 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 LHFPL5Q8TAF8 219 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 CNIH3Q8TBE1 160 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 MAGEE2Q8TD90 523 aaPredicted RBP4.52□□□□□ -1.69
CCDC39-205ENST00000485055 NEU4Q8WWR8 484 aaPredicted RBP4.52□□□□□ -1.69
CCDC39-205ENST00000485055 ZBED6CLQ96FA7 236 aaPredicted RBP4.52□□□□□ -1.69
CCDC39-205ENST00000485055 JSRP1Q96MG2 331 aaPredicted RBP4.52□□□□□ -1.69
CCDC39-205ENST00000485055 MS4A4EQ96PG1 132 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 TSNAXQ99598 290 aaKnown RBP4.52□□□□□ -1.69
CCDC39-205ENST00000485055 TUBB1Q9H4B7 451 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 PIEZO2Q9H5I5 2752 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 TRAV24A0A0B4J272 114 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 B4DXG7 233 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 RNASET2O00584 256 aaKnown RBP4.52□□□□□ -1.69
CCDC39-205ENST00000485055 ACOT8O14734 319 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 RPS4Y1P22090 263 aaKnown RBP4.52□□□□□ -1.69
CCDC39-205ENST00000485055 CRYGSP22914 178 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 NTSP30990 170 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 ZNF84P51523 738 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 FBXW4P57775 412 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 TRMT12Q53H54 448 aaKnown RBP4.52□□□□□ -1.69
CCDC39-205ENST00000485055 PAMR1Q6UXH9 720 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 DCDC5Q6ZRR9 648 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 OR6V1Q8N148 313 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 RNF175Q8N4F7 328 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 OR56A1Q8NGH5 318 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 ZNF503Q96F45 646 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 FAM210BQ96KR6 192 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 POM121L2Q96KW2 1035 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 SGK494Q96LW2 274 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 ZNF488Q96MN9 340 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 SNX18Q96RF0 628 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 ALG8Q9BVK2 526 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 PLEKHF2Q9H8W4 249 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 MARCH7Q9H992 704 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 LRTM1Q9HBL6 345 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 TMBIM4Q9HC24 238 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 VCX3AQ9NNX9 186 aa4.52□□□□□ -1.69
CCDC39-205ENST00000485055 SIGLEC8Q9NYZ4 499 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms