RNA–Protein interactions for RNA: ENST00000483941.1

SMAD9-204, Transcript of SMAD family member 9, humanhuman

TSL 3

Gene SMAD9, Length 545 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-204ENST00000483941 RNF115Q9Y4L5 304 aa11.96□□□□□ -0.49
SMAD9-204ENST00000483941 PMF1-BGLAPU3KQ54 211 aa11.96□□□□□ -0.49
SMAD9-204ENST00000483941 HCFC1P51610 2035 aa11.96□□□□□ -0.5
SMAD9-204ENST00000483941 IGLV3-9A0A075B6K5 115 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 IGKV1-9A0A0C4DH69 117 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 FAM230AA0A1W2PPH8 454 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 SMIM30A4D0T7 59 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 TMEM210A6NLX4 147 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 SCGNO76038 276 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 APOA1P02647 267 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 ALDH3B1P43353 468 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 ZNF45Q02386 682 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 OR8G1Q15617 311 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 HES5Q5TA89 166 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 AWAT2Q6E213 333 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 METAP1DQ6UB28 335 aaPredicted RBP11.95□□□□□ -0.5
SMAD9-204ENST00000483941 NR2C2APQ86WQ0 139 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 LRRC28Q86X40 367 aaPredicted RBP11.95□□□□□ -0.5
SMAD9-204ENST00000483941 ANGPTL5Q86XS5 388 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 ZSCAN4Q8NAM6 433 aaPredicted RBP11.95□□□□□ -0.5
SMAD9-204ENST00000483941 TRMT10AQ8TBZ6 339 aaKnown RBP11.95□□□□□ -0.5
SMAD9-204ENST00000483941 TBC1D15Q8TC07 691 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 C15orf40Q8WUR7 153 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 TMEM171Q8WVE6 324 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 OR5P3Q8WZ94 311 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 MRPL24Q96A35 216 aaKnown RBP11.95□□□□□ -0.5
SMAD9-204ENST00000483941 PHF21AQ96BD5 680 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 FAM3DQ96BQ1 224 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 DIRC2Q96SL1 478 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 GFI1Q99684 422 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 CST11Q9H112 138 aa11.95□□□□□ -0.5
SMAD9-204ENST00000483941 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.94□□□□□ -0.5
SMAD9-204ENST00000483941 FAM221AA4D161 298 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 METTL21EPA6NDL7 271 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 H3BUI4 141 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 TPPPO94811 219 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 SLC2A2P11168 524 aaPredicted RBP11.94□□□□□ -0.5
SMAD9-204ENST00000483941 RAB6AP20340 208 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 CA6P23280 308 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 TNFSF4P23510 183 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 PTBP1P26599 531 aaKnown RBP eCLIP11.94□□□□□ -0.5
SMAD9-204ENST00000483941 THBS2P35442 1172 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 MPV17P39210 176 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 PTGFRP43088 359 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 ERVS71-1P61550 626 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 UBE2NLQ5JXB2 153 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 FAM166AQ6J272 317 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 VHLLQ6RSH7 139 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 BAIAP2L2Q6UXY1 529 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 OR2W3Q7Z3T1 314 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 MKXQ8IYA7 352 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 SAXO1Q8IYX7 474 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 SAMD12Q8N8I0 201 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 BHLHE23Q8NDY6 225 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 KCNG3Q8TAE7 436 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 S100A16Q96FQ6 103 aaKnown RBP11.94□□□□□ -0.5
SMAD9-204ENST00000483941 RNF170Q96K19 258 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 PLK3Q9H4B4 646 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 CNTD2Q9H8S5 307 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 RHOFQ9HBH0 211 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 NPDC1Q9NQX5 325 aaPredicted RBP11.94□□□□□ -0.5
SMAD9-204ENST00000483941 FBLN5Q9UBX5 448 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 RAB22AQ9UL26 194 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 ZDHHC8Q9ULC8 765 aa11.94□□□□□ -0.5
SMAD9-204ENST00000483941 MRPS28Q9Y2Q9 187 aaKnown RBP11.94□□□□□ -0.5
SMAD9-204ENST00000483941 PRRC2AP48634 2157 aaKnown RBP11.94□□□□□ -0.5
SMAD9-204ENST00000483941 NSD1Q96L73 2696 aaPredicted RBP11.94□□□□□ -0.5
SMAD9-204ENST00000483941 PQLC2LA1A4F0 135 aa11.93□□□□□ -0.5
SMAD9-204ENST00000483941 FAM25AB3EWG3 89 aa11.93□□□□□ -0.5
SMAD9-204ENST00000483941 FAM25CB3EWG5 89 aa11.93□□□□□ -0.5
SMAD9-204ENST00000483941 FAM25GB3EWG6 89 aa11.93□□□□□ -0.5
SMAD9-204ENST00000483941 ZNF732B4DXR9 585 aa11.93□□□□□ -0.5
SMAD9-204ENST00000483941 CLDN25C9JDP6 229 aa11.93□□□□□ -0.5
SMAD9-204ENST00000483941 TMEM225BP0DP42 221 aa11.93□□□□□ -0.5
SMAD9-204ENST00000483941 APOBEC3AP31941 199 aaPredicted RBP11.93□□□□□ -0.5
SMAD9-204ENST00000483941 ZNF846Q147U1 533 aa11.93□□□□□ -0.5
SMAD9-204ENST00000483941 NKPD1Q17RQ9 610 aa11.93□□□□□ -0.5
SMAD9-204ENST00000483941 C2orf76Q3KRA6 126 aa11.93□□□□□ -0.5
SMAD9-204ENST00000483941 RAB12Q6IQ22 244 aa11.93□□□□□ -0.5
SMAD9-204ENST00000483941 LYPD6Q86Y78 171 aa11.93□□□□□ -0.5
SMAD9-204ENST00000483941 TGIF2LYQ8IUE0 185 aa11.93□□□□□ -0.5
SMAD9-204ENST00000483941 DMRTC2Q8IXT2 367 aaPredicted RBP11.93□□□□□ -0.5
SMAD9-204ENST00000483941 PXT1Q8NFP0 134 aa11.93□□□□□ -0.5
SMAD9-204ENST00000483941 TNFAIP8L1Q8WVP5 186 aa11.93□□□□□ -0.5
SMAD9-204ENST00000483941 ITPKCQ96DU7 683 aa11.93□□□□□ -0.5
SMAD9-204ENST00000483941 DIRAS2Q96HU8 199 aa11.93□□□□□ -0.5
SMAD9-204ENST00000483941 ADAT1Q9BUB4 502 aaKnown RBP11.93□□□□□ -0.5
SMAD9-204ENST00000483941 METTL9Q9H1A3 318 aa11.93□□□□□ -0.5
SMAD9-204ENST00000483941 CXXC4Q9H2H0 198 aa11.93□□□□□ -0.5
SMAD9-204ENST00000483941 ABCA4P78363 2273 aa11.92□□□□□ -0.5
SMAD9-204ENST00000483941 A0A0A6YYH2 397 aa11.92□□□□□ -0.5
SMAD9-204ENST00000483941 A0A1B0GWJ7 208 aa11.92□□□□□ -0.5
SMAD9-204ENST00000483941 A6NJ64 397 aa11.92□□□□□ -0.5
SMAD9-204ENST00000483941 CTDSP2O14595 271 aa11.92□□□□□ -0.5
SMAD9-204ENST00000483941 KDM4BO94953 1096 aa11.92□□□□□ -0.5
SMAD9-204ENST00000483941 CSTBP04080 98 aaKnown RBP11.92□□□□□ -0.5
SMAD9-204ENST00000483941 OR4A8P0C604 315 aa11.92□□□□□ -0.5
SMAD9-204ENST00000483941 BMP4P12644 408 aa11.92□□□□□ -0.5
SMAD9-204ENST00000483941 SNRPBP14678 240 aaKnown RBP11.92□□□□□ -0.5
SMAD9-204ENST00000483941 TNFSF8P32971 234 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms