RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 DCTN2Q13561 401 aaKnown RBP13.8□□□□□ -0.2
VIM-204ENST00000478746 EIF2B1Q14232 305 aaKnown RBP13.8□□□□□ -0.2
VIM-204ENST00000478746 TCTEX1D4Q5JR98 221 aa13.8□□□□□ -0.2
VIM-204ENST00000478746 ZNF782Q6ZMW2 699 aaPredicted RBP13.8□□□□□ -0.2
VIM-204ENST00000478746 OR4M1Q8NGD0 313 aa13.8□□□□□ -0.2
VIM-204ENST00000478746 OR2T27Q8NH04 317 aa13.8□□□□□ -0.2
VIM-204ENST00000478746 ZNF671Q8TAW3 534 aa13.8□□□□□ -0.2
VIM-204ENST00000478746 GNPDA2Q8TDQ7 276 aa13.8□□□□□ -0.2
VIM-204ENST00000478746 PGAM5Q96HS1 289 aa13.8□□□□□ -0.2
VIM-204ENST00000478746 GPR61Q9BZJ8 451 aa13.8□□□□□ -0.2
VIM-204ENST00000478746 FGF23Q9GZV9 251 aaPredicted RBP13.8□□□□□ -0.2
VIM-204ENST00000478746 RGCCQ9H4X1 137 aa13.8□□□□□ -0.2
VIM-204ENST00000478746 TBL2Q9Y4P3 447 aaKnown RBP13.8□□□□□ -0.2
VIM-204ENST00000478746 FAM107AO95990 144 aa13.79□□□□□ -0.2
VIM-204ENST00000478746 CCL3L1P16619 93 aa13.79□□□□□ -0.2
VIM-204ENST00000478746 ACKR3P25106 362 aa13.79□□□□□ -0.2
VIM-204ENST00000478746 GSSP48637 474 aa13.79□□□□□ -0.2
VIM-204ENST00000478746 GPM6AP51674 278 aa13.79□□□□□ -0.2
VIM-204ENST00000478746 COL10A1Q03692 680 aa13.79□□□□□ -0.2
VIM-204ENST00000478746 TSPAN31Q12999 210 aa13.79□□□□□ -0.2
VIM-204ENST00000478746 RNF144BQ7Z419 303 aa13.79□□□□□ -0.2
VIM-204ENST00000478746 THAP5Q7Z6K1 395 aa13.79□□□□□ -0.2
VIM-204ENST00000478746 SLC37A3Q8NCC5 494 aa13.79□□□□□ -0.2
VIM-204ENST00000478746 OR52L1Q8NGH7 329 aa13.79□□□□□ -0.2
VIM-204ENST00000478746 EGLN3Q9H6Z9 239 aa13.79□□□□□ -0.2
VIM-204ENST00000478746 EFCAB1Q9HAE3 211 aa13.79□□□□□ -0.2
VIM-204ENST00000478746 SAMD4AQ9UPU9 718 aaKnown RBP13.79□□□□□ -0.2
VIM-204ENST00000478746 U3KQK5 164 aa13.79□□□□□ -0.2
VIM-204ENST00000478746 RFPL4AA6NLU0 287 aa13.78□□□□□ -0.2
VIM-204ENST00000478746 RFPL4AL1F8VTS6 287 aa13.78□□□□□ -0.2
VIM-204ENST00000478746 H3BUI4 141 aa13.78□□□□□ -0.2
VIM-204ENST00000478746 GYPBP06028 91 aa13.78□□□□□ -0.2
VIM-204ENST00000478746 GLYATQ6IB77 296 aa13.78□□□□□ -0.2
VIM-204ENST00000478746 C8orf82Q6P1X6 216 aaPredicted RBP13.78□□□□□ -0.2
VIM-204ENST00000478746 PIGWQ7Z7B1 504 aa13.78□□□□□ -0.2
VIM-204ENST00000478746 CALHM1Q8IU99 346 aa13.78□□□□□ -0.2
VIM-204ENST00000478746 ZDHHC23Q8IYP9 409 aa13.78□□□□□ -0.2
VIM-204ENST00000478746 OR13D1Q8NGV5 346 aa13.78□□□□□ -0.2
VIM-204ENST00000478746 HPSE2Q8WWQ2 592 aa13.78□□□□□ -0.2
VIM-204ENST00000478746 MYDGFQ969H8 173 aa13.78□□□□□ -0.2
VIM-204ENST00000478746 CHID1Q9BWS9 393 aa13.78□□□□□ -0.2
VIM-204ENST00000478746 C1orf21Q9H246 121 aa13.78□□□□□ -0.2
VIM-204ENST00000478746 DCAF13Q9NV06 445 aaKnown RBP13.78□□□□□ -0.2
VIM-204ENST00000478746 RASL12Q9NYN1 266 aa13.78□□□□□ -0.2
VIM-204ENST00000478746 ZNF732B4DXR9 585 aa13.77□□□□□ -0.21
VIM-204ENST00000478746 C3orf84H3BNL1 204 aa13.77□□□□□ -0.21
VIM-204ENST00000478746 MTRF1O75570 445 aaKnown RBP13.77□□□□□ -0.21
VIM-204ENST00000478746 DYNLT3P51808 116 aa13.77□□□□□ -0.21
VIM-204ENST00000478746 OR12D2P58182 307 aa13.77□□□□□ -0.21
VIM-204ENST00000478746 LDLRAD2Q5SZI1 272 aa13.77□□□□□ -0.21
VIM-204ENST00000478746 HACD2Q6Y1H2 254 aa13.77□□□□□ -0.21
VIM-204ENST00000478746 ZNF561Q8N587 486 aa13.77□□□□□ -0.21
VIM-204ENST00000478746 CD177Q8N6Q3 437 aa13.77□□□□□ -0.21
VIM-204ENST00000478746 OR6K6Q8NGW6 343 aa13.77□□□□□ -0.21
VIM-204ENST00000478746 RNF133Q8WVZ7 376 aa13.77□□□□□ -0.21
VIM-204ENST00000478746 ABHD6Q9BV23 337 aa13.77□□□□□ -0.21
VIM-204ENST00000478746 OR51I2Q9H344 312 aa13.77□□□□□ -0.21
VIM-204ENST00000478746 ARL2BPQ9Y2Y0 163 aa13.77□□□□□ -0.21
VIM-204ENST00000478746 C17orf98A8MV24 154 aa13.76□□□□□ -0.21
VIM-204ENST00000478746 ODF3BA8MYP8 253 aa13.76□□□□□ -0.21
VIM-204ENST00000478746 SLC1A7O00341 560 aa13.76□□□□□ -0.21
VIM-204ENST00000478746 CCDC22O60826 627 aa13.76□□□□□ -0.21
VIM-204ENST00000478746 GMNNO75496 209 aa13.76□□□□□ -0.21
VIM-204ENST00000478746 SPI1P17947 270 aa13.76□□□□□ -0.21
VIM-204ENST00000478746 PRDX2P32119 198 aa13.76□□□□□ -0.21
VIM-204ENST00000478746 BLVRAP53004 296 aa13.76□□□□□ -0.21
VIM-204ENST00000478746 GNG3P63215 75 aa13.76□□□□□ -0.21
VIM-204ENST00000478746 DYNC1I2Q13409 638 aaKnown RBP13.76□□□□□ -0.21
VIM-204ENST00000478746 ZNF273Q14593 569 aa13.76□□□□□ -0.21
VIM-204ENST00000478746 KHDC1LQ5JSQ8 128 aa13.76□□□□□ -0.21
VIM-204ENST00000478746 RPL13AP3Q6NVV1 102 aa13.76□□□□□ -0.21
VIM-204ENST00000478746 LINC00471Q8N535 108 aa13.76□□□□□ -0.21
VIM-204ENST00000478746 OR4X2Q8NGF9 303 aa13.76□□□□□ -0.21
VIM-204ENST00000478746 HILPDAQ9Y5L2 63 aa13.76□□□□□ -0.21
VIM-204ENST00000478746 CDH10Q9Y6N8 788 aa13.76□□□□□ -0.21
VIM-204ENST00000478746 CHRM2P08172 466 aa13.75□□□□□ -0.21
VIM-204ENST00000478746 H2BFMP0C1H6 154 aa13.75□□□□□ -0.21
VIM-204ENST00000478746 CLUP10909 449 aa13.75□□□□□ -0.21
VIM-204ENST00000478746 AZGP1P25311 298 aaKnown RBP13.75□□□□□ -0.21
VIM-204ENST00000478746 NUDT2P50583 147 aa13.75□□□□□ -0.21
VIM-204ENST00000478746 CRMP1Q14194 572 aa13.75□□□□□ -0.21
VIM-204ENST00000478746 ZNF626Q68DY1 528 aa13.75□□□□□ -0.21
VIM-204ENST00000478746 ACP7Q6ZNF0 438 aa13.75□□□□□ -0.21
VIM-204ENST00000478746 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.75□□□□□ -0.21
VIM-204ENST00000478746 LINC00482Q8N8I6 264 aa13.75□□□□□ -0.21
VIM-204ENST00000478746 CCDC197Q8NCU1 140 aa13.75□□□□□ -0.21
VIM-204ENST00000478746 OR11H6Q8NGC7 330 aa13.75□□□□□ -0.21
VIM-204ENST00000478746 OR6N2Q8NGY6 317 aa13.75□□□□□ -0.21
VIM-204ENST00000478746 BCAS4Q8TDM0 211 aa13.75□□□□□ -0.21
VIM-204ENST00000478746 AQP3Q92482 292 aa13.75□□□□□ -0.21
VIM-204ENST00000478746 LYZL4Q96KX0 146 aa13.75□□□□□ -0.21
VIM-204ENST00000478746 NMNAT2Q9BZQ4 307 aa13.75□□□□□ -0.21
VIM-204ENST00000478746 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.75□□□□□ -0.21
VIM-204ENST00000478746 ABCD2Q9UBJ2 740 aa13.75□□□□□ -0.21
VIM-204ENST00000478746 V9GYQ6 96 aa13.75□□□□□ -0.21
VIM-204ENST00000478746 JUNBP17275 347 aaPredicted RBP13.74□□□□□ -0.21
VIM-204ENST00000478746 LMO1P25800 156 aa13.74□□□□□ -0.21
VIM-204ENST00000478746 OPRL1P41146 370 aa13.74□□□□□ -0.21
VIM-204ENST00000478746 DLX6P56179 175 aa13.74□□□□□ -0.21
VIM-204ENST00000478746 PSME3P61289 254 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms