RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 IGSF11Q5DX21 431 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.02□□□□□ -0.49
COL6A3-209ENST00000472056 CD207Q9UJ71 328 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 DCTDP32321 178 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 LINC00303Q3SY05 128 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 SLC16A11Q8NCK7 471 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 PRSS3P2Q8NHM4 247 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 PCNPQ8WW12 178 aaKnown RBP12.02□□□□□ -0.49
COL6A3-209ENST00000472056 TP53RKQ96S44 253 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 MIOXQ9UGB7 285 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 FITM1A5D6W6 292 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 LEUTXA8MZ59 168 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 EDDM3BP56851 147 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 FUT7Q11130 342 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 LINC00346Q8IVM7 164 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 OR10G3Q8NGC4 313 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 CLDN23Q96B33 292 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 PBOV1Q9GZY1 135 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 M0QZ24 198 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 PPICP45877 212 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 DEFB110Q30KQ9 67 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 NLGN4XQ8N0W4 816 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 APOBEC3DQ96AK3 386 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-209ENST00000472056 TMPRSS13Q9BYE2 586 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 PRSS21Q9Y6M0 314 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 ABOP16442 354 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 BMP5P22003 454 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 C21orf58P58505 322 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 KHDC3LQ587J8 217 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 SLC25A30Q5SVS4 291 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 OR4A47Q6IF82 309 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 OR4A4PQ8NGN8 299 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 TEX37Q96LM6 180 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 MRPS2Q9Y399 296 aaKnown RBP12.01□□□□□ -0.49
COL6A3-209ENST00000472056 TMEM30CPA0ZSE6 113 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 P2RY1P47900 373 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 SNRPNP63162 240 aaKnown RBP12.01□□□□□ -0.49
COL6A3-209ENST00000472056 WDR74Q6RFH5 385 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-209ENST00000472056 OR2D3Q8NGH3 330 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 ADTRPQ96IZ2 230 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 HES4Q9HCC6 221 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 COL16A1Q07092 1604 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-209ENST00000472056 HS3ST1O14792 307 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 HLA-DRB3P79483 266 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 PRTGQ2VWP7 1150 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 LRRTM3Q86VH5 581 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 BPIFA4PQ86YQ2 179 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 DAPP1Q9UN19 280 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 OR2T8A6NH00 312 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 PMCHL1Q16048 86 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 PARP11Q9NR21 331 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 CA10Q9NS85 328 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 VAX2Q9UIW0 290 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 ZNF195O14628 629 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 PNLIPRP2P54317 469 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 OR4F17Q8NGA8 305 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 OR5A2Q8NGI9 324 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 XAF1Q6GPH4 301 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 DHRS7BQ6IAN0 325 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-209ENST00000472056 KMT5CQ86Y97 462 aa12.01□□□□□ -0.49
COL6A3-209ENST00000472056 SBF2Q86WG5 1849 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 DNAJC25-GNG10A0A024R161 153 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 C9orf170A2RU37 121 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 TGFBR1P36897 503 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 CRYBB2P43320 205 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 MAT1AQ00266 395 aaKnown RBP12□□□□□ -0.49
COL6A3-209ENST00000472056 TMEM231Q9H6L2 316 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 SH3BGRL2Q9UJC5 107 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 COA3Q9Y2R0 106 aaPredicted RBP12□□□□□ -0.49
COL6A3-209ENST00000472056 TRGV10A0A0A0MS01 117 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 HTR1DP28221 377 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 BRS3P32247 399 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 RIGQ13278 110 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 BANF2Q9H503 90 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 IGSF23A1L1A6 192 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 OR5AL1P0C617 328 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 OR2J1Q9GZK6 312 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 OR51B6Q9H340 312 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 PPP1R3CQ9UQK1 317 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 A0A1B0GV72 72 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 KLF7O75840 302 aaPredicted RBP12□□□□□ -0.49
COL6A3-209ENST00000472056 OTOSQ8NHW6 89 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 TMEM147Q9BVK8 224 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 ADAMTS5Q9UNA0 930 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 S100A4P26447 101 aaKnown RBP12□□□□□ -0.49
COL6A3-209ENST00000472056 C12orf73Q69YU5 71 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 NHLRC1Q6VVB1 395 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 DEFB132Q7Z7B7 95 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 MRGPRGQ86SM5 289 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 LINC00596Q86U02 117 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 OR5M9Q8NGP3 310 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 TMEM52BQ4KMG9 183 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 OR5M10Q6IEU7 315 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 RBM38Q9H0Z9 239 aaKnown RBP12□□□□□ -0.49
COL6A3-209ENST00000472056 NAA60Q9H7X0 242 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 CALHM2Q9HA72 323 aa12□□□□□ -0.49
COL6A3-209ENST00000472056 HTRA3P83110 453 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 RPL18Q07020 188 aaKnown RBP11.99□□□□□ -0.49
COL6A3-209ENST00000472056 OR5C1Q8NGR4 320 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 EXOGQ9Y2C4 368 aaKnown RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms