RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-209	ENST00000469511	RNPEPL1	Q9HAU8	725 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	MRPL22	Q9NWU5	206 aa	Known RBP	4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	CCDC167	Q9P0B6	97 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	ZNF319	Q9P2F9	582 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	GRHPR	Q9UBQ7	328 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	LINC00527	Q9UJ94	153 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	ZNF222	Q9UK12	451 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	B9D1	Q9UPM9	204 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	AURKC	Q9UQB9	309 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	POLR1D	Q9Y2S0	133 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	HILPDA	Q9Y5L2	63 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	DNAH10	Q8IVF4	4471 aa		4.15	□□□□□ -1.74
PTPN4-209	ENST00000469511		A0A087WUU8	490 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	FAM90A22P	A8MWA6	464 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	EFCAB9	A8MZ26	197 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	EVPLL	A8MZ36	301 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511		M0R135	149 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	RAMP3	O60896	148 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	SNN	O75324	88 aa	Predicted RBP	4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	ARG1	P05089	322 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	FRMD6-AS1	P0C7T7	363 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	PSG2	P11465	335 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	PIP	P12273	146 aa	Predicted RBP	4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	SLC25A1	P53007	311 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	CAV3	P56539	151 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	RAB25	P57735	213 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	RAP2B	P61225	183 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	FAM3A	P98173	230 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	PRKCD	Q05655	676 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	KRR1	Q13601	381 aa	Known RBP	4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	BLMH	Q13867	455 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	C9orf152	Q5JTZ5	239 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	UNQ9370/PRO34162	Q6UXP9	181 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	BAIAP2L2	Q6UXY1	529 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR2W3	Q7Z3T1	314 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	BATF2	Q8N1L9	274 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	CD177	Q8N6Q3	437 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	TMEM185A	Q8NFB2	350 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	SLC26A10	Q8NG04	563 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR5D13	Q8NGL4	314 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR8S1	Q8NH09	359 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR10A6	Q8NH74	314 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	RPS4Y2	Q8TD47	263 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	SLC26A7	Q8TE54	656 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	SGK3	Q96BR1	496 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	ZNF799	Q96GE5	643 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	ZNF488	Q96MN9	340 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	ATF6B	Q99941	703 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	PAIP2	Q9BPZ3	127 aa	Known RBP	4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	ELAC2	Q9BQ52	826 aa	Known RBP	4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	TLNRD1	Q9H1K6	362 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	HEXA-AS1	Q9H8Q6	139 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	PPCS	Q9HAB8	311 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	NMNAT1	Q9HAN9	279 aa	Predicted RBP	4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	MRPL15	Q9P015	296 aa	Known RBP	4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	ATPIF1	Q9UII2	106 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	RHBDD3	Q9Y3P4	386 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	IER3IP1	Q9Y5U9	82 aa		4.15	□□□□□ -1.75
PTPN4-209	ENST00000469511	TVP23A	A6NH52	213 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	LINC01548	A6NM66	108 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	TRPC5OS	A6NMA1	111 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR2AT4	A6NND4	320 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	XKRY	O14609	159 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	MMP23A	O75900	390 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	CLIC3	O95833	236 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	HCK	P08631	526 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	PPIB	P23284	216 aa	Known RBP	4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	DCTD	P32321	178 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	MYCNOS	P40205	109 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	ENTPD1	P49961	510 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	TPTE	P56180	551 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	SLC34A1	Q06495	639 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	DCTN2	Q13561	401 aa	Known RBP	4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	CYP51A1	Q16850	503 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	ZBED5	Q49AG3	693 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	AGK	Q53H12	422 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	UTF1	Q5T230	341 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	ZNF626	Q68DY1	528 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	EPGN	Q6UW88	154 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511		Q6ZSN1	163 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	CCDC80	Q76M96	950 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	SLC16A9	Q7RTY1	509 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	PATL1	Q86TB9	770 aa	Known RBP	4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	ANKRD42	Q8N9B4	389 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	KLHL30-AS1	Q8NEE0	82 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	MNS1	Q8NEH6	495 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR4X2	Q8NGF9	303 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR2T27	Q8NH04	317 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR5K1	Q8NHB7	308 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	HPSE2	Q8WWQ2	592 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	C12orf43	Q96C57	262 aa	Known RBP	4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	MALSU1	Q96EH3	234 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	MED30	Q96HR3	178 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	NMNAT3	Q96T66	252 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	MCRIP2	Q9BUT9	160 aa	Known RBP	4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	GPR61	Q9BZJ8	451 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	SLC22A4	Q9H015	551 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	KAT8	Q9H7Z6	458 aa	Known RBP	4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	NRIP3	Q9NQ35	241 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	ABCB10	Q9NRK6	738 aa		4.14	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms