RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 SLC22A6Q4U2R8 563 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 NHLRC3Q5JS37 347 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 SFRP5Q5T4F7 317 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 C1QTNF12Q5T7M4 302 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 ATP1A1-AS1Q5TC04 95 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 ATPAF1Q5TC12 328 aaPredicted RBP6.6□□□□□ -1.35
COL6A3-208ENST00000468792 ELP2Q6IA86 826 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 FAAP20Q6NZ36 180 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 NLRC3Q7RTR2 1065 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 NUFIP2Q7Z417 695 aaKnown RBP6.6□□□□□ -1.35
COL6A3-208ENST00000468792 RNF144BQ7Z419 303 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 C1QL2Q7Z5L3 287 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 TMEM200AQ86VY9 491 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 UXS1Q8NBZ7 420 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 C1orf162Q8NEQ5 155 aaPredicted RBP6.6□□□□□ -1.35
COL6A3-208ENST00000468792 TMEM185AQ8NFB2 350 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 BEST4Q8NFU0 473 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 OR2AK2Q8NG84 335 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 OR51T1Q8NGJ9 327 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 OR5L1Q8NGL2 311 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 OR1K1Q8NGR3 316 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 TERB2Q8NHR7 220 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 BCL2L2Q92843 193 aaPredicted RBP6.6□□□□□ -1.35
COL6A3-208ENST00000468792 SARAFQ96BY9 339 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 BORCS8Q96FH0 119 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 GPR137Q96N19 417 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 SPACA5Q96QH8 159 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 SLC6A7Q99884 636 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 DHRS9Q9BPW9 319 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 TINAGL1Q9GZM7 467 aaPredicted RBP6.6□□□□□ -1.35
COL6A3-208ENST00000468792 RHOFQ9HBH0 211 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 IFT46Q9NQC8 304 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 TUBG2Q9NRH3 451 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 DECR2Q9NUI1 292 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 PIPOXQ9P0Z9 390 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 ZNF222Q9UK12 451 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 LIPGQ9Y5X9 500 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 CACNA1GO43497 2377 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 TNRC6AQ8NDV7 1962 aaKnown RBP6.59□□□□□ -1.35
COL6A3-208ENST00000468792 A0A0B4J2A0 478 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 AHRRA9YTQ3 701 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 G3V3Q6 166 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 IL18BPO95998 194 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 RLN1P04808 185 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 IFNA6P05013 189 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 TPOP07202 933 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 PATE4P0C8F1 98 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 BLVRBP30043 206 aaPredicted RBP6.59□□□□□ -1.35
COL6A3-208ENST00000468792 CCL11P51671 97 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 RAB1AP62820 205 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 CXADRP78310 365 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 PDZK1IP1Q13113 114 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 CEACAM21Q3KPI0 293 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 Q5BKY6 102 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 OR2A2Q6IF42 318 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 RPUSD3Q6P087 351 aaKnown RBP6.59□□□□□ -1.35
COL6A3-208ENST00000468792 PEG10Q86TG7 708 aaKnown RBP6.59□□□□□ -1.35
COL6A3-208ENST00000468792 VASH2Q86V25 355 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 LHFPL1Q86WI0 220 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 TMEM17Q86X19 198 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 C1orf174Q8IYL3 243 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 MUC20Q8N307 709 aaPredicted RBP6.59□□□□□ -1.35
COL6A3-208ENST00000468792 OR2T35Q8NGX2 323 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 OR8S1Q8NH09 359 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 OR4K15Q8NH41 348 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 OR2AE1Q8NHA4 323 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 NUDCD2Q8WVJ2 157 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 DVL3Q92997 716 aaPredicted RBP6.59□□□□□ -1.35
COL6A3-208ENST00000468792 FBXW5Q969U6 566 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 CMBLQ96DG6 245 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 ARHGAP5-AS1Q96IT6 56 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 ZNF75AQ96N20 296 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 NKX3-1Q99801 234 aaPredicted RBP6.59□□□□□ -1.35
COL6A3-208ENST00000468792 SLX1AQ9BQ83 275 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 SEC22CQ9BRL7 303 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 NICN1Q9BSH3 213 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 PECRQ9BY49 303 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 DEFB127Q9H1M4 99 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 POFUT1Q9H488 388 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 ZMAT3Q9HA38 289 aaKnown RBP6.59□□□□□ -1.35
COL6A3-208ENST00000468792 GPR173Q9NS66 373 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 MYEF2Q9P2K5 600 aaKnown RBP6.59□□□□□ -1.35
COL6A3-208ENST00000468792 EIF3KQ9UBQ5 218 aaKnown RBP6.59□□□□□ -1.35
COL6A3-208ENST00000468792 ZNF69Q9UC07 566 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 SHPKQ9UHJ6 478 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 ELF5Q9UKW6 265 aaPredicted RBP6.59□□□□□ -1.35
COL6A3-208ENST00000468792 MGAT4AQ9UM21 535 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 NOP16Q9Y3C1 178 aaKnown RBP6.59□□□□□ -1.35
COL6A3-208ENST00000468792 HSPB11Q9Y547 144 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 MPC1Q9Y5U8 109 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 KCNMB2Q9Y691 235 aa6.59□□□□□ -1.35
COL6A3-208ENST00000468792 CNOT1A5YKK6 2376 aaKnown RBP6.59□□□□□ -1.35
COL6A3-208ENST00000468792 IGKV1-27A0A075B6S5 117 aa6.58□□□□□ -1.36
COL6A3-208ENST00000468792 A0A1W2PP11 408 aa6.58□□□□□ -1.36
COL6A3-208ENST00000468792 PLSCR5A0PG75 271 aa6.58□□□□□ -1.36
COL6A3-208ENST00000468792 PQLC2LA1A4F0 135 aa6.58□□□□□ -1.36
COL6A3-208ENST00000468792 MEIS3P1A6NDR6 274 aa6.58□□□□□ -1.36
COL6A3-208ENST00000468792 FIGNL2A6NMB9 653 aa6.58□□□□□ -1.36
COL6A3-208ENST00000468792 M0QYG6 137 aa6.58□□□□□ -1.36
COL6A3-208ENST00000468792 CD8AP01732 235 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms