RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 ZNF593O00488 134 aaPredicted RBP6.82□□□□□ -1.32
USP54-210ENST00000466048 PLPP2O43688 288 aa6.82□□□□□ -1.32
USP54-210ENST00000466048 NTN1O95631 604 aa6.82□□□□□ -1.32
USP54-210ENST00000466048 COL5A1P20908 1838 aaPredicted RBP6.82□□□□□ -1.32
USP54-210ENST00000466048 CCKARP32238 428 aa6.82□□□□□ -1.32
USP54-210ENST00000466048 BIDP55957 195 aa6.82□□□□□ -1.32
USP54-210ENST00000466048 SLC9A3R2Q15599 337 aa6.82□□□□□ -1.32
USP54-210ENST00000466048 ADGRE4PQ86SQ3 457 aa6.82□□□□□ -1.32
USP54-210ENST00000466048 ABCA7Q8IZY2 2146 aa6.82□□□□□ -1.32
USP54-210ENST00000466048 TMEM99Q8N816 258 aa6.82□□□□□ -1.32
USP54-210ENST00000466048 PRSS33Q8NF86 280 aa6.82□□□□□ -1.32
USP54-210ENST00000466048 OR52I2Q8NH67 350 aa6.82□□□□□ -1.32
USP54-210ENST00000466048 NOL4LQ96MY1 436 aaPredicted RBP6.82□□□□□ -1.32
USP54-210ENST00000466048 CRLF2Q9HC73 371 aa6.82□□□□□ -1.32
USP54-210ENST00000466048 EHFQ9NZC4 300 aa6.82□□□□□ -1.32
USP54-210ENST00000466048 B3GAT1Q9P2W7 334 aa6.82□□□□□ -1.32
USP54-210ENST00000466048 GDF2Q9UK05 429 aaPredicted RBP6.82□□□□□ -1.32
USP54-210ENST00000466048 IGKV1D-42A0A075B6H8 117 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 TRAV1-2A0A0B4J238 106 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 LRP5LA4QPB2 252 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 ANGPTL7O43827 346 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 BGLAPP02818 100 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 RPA2P15927 270 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 SRMP19623 302 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 HIST1H3AP68431 136 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 HSF1Q00613 529 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 PLAURQ03405 335 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 RPL18Q07020 188 aaKnown RBP6.81□□□□□ -1.32
USP54-210ENST00000466048 PRSS35Q8N3Z0 413 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 C9orf62Q8N4C0 152 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 RELL2Q8NC24 303 aaPredicted RBP6.81□□□□□ -1.32
USP54-210ENST00000466048 BPIFCQ8NFQ6 507 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 OR2G2Q8NGZ5 317 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 HPSE2Q8WWQ2 592 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 NPAS1Q99742 590 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 HIPK2Q9H2X6 1198 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 NOX4Q9NPH5 578 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 PLEKHJ1Q9NW61 149 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 CSAG2Q9Y5P2 127 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 ACOD1A6NK06 481 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 ATXN7O15265 892 aaPredicted RBP6.81□□□□□ -1.32
USP54-210ENST00000466048 ST8SIA3O43173 380 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 TRAF3IP2O43734 574 aaPredicted RBP6.81□□□□□ -1.32
USP54-210ENST00000466048 APOA2P02652 100 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 HPNP05981 417 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 G0S2P27469 103 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 FABP6P51161 128 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 TPPP2P59282 170 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 UBE2MP61081 183 aaKnown RBP6.81□□□□□ -1.32
USP54-210ENST00000466048 DGCR2P98153 550 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 CLN3Q13286 438 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 RPUSD3Q6P087 351 aaKnown RBP6.81□□□□□ -1.32
USP54-210ENST00000466048 ARIH2OSQ8N7S6 290 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 OR10G3Q8NGC4 313 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 OR51S1Q8NGJ8 323 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 PRR7Q8TB68 274 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 NMNAT3Q96T66 252 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 SEC11CQ9BY50 192 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 TXNIPQ9H3M7 391 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 HS3ST3B1Q9Y662 390 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 LOC102723996A0A087X1L8 192 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 LRRC30A6NM36 301 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 CST2P09228 141 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 SOX8P57073 446 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 SCAND1P57086 179 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 RAC3P60763 192 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 MRPS34P82930 218 aaKnown RBP6.81□□□□□ -1.32
USP54-210ENST00000466048 EGR3Q06889 387 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 RTP5Q14D33 572 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 ADIRFQ15847 76 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 TMEM183BQ1AE95 376 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 ZNF385CQ66K41 422 aaPredicted RBP6.81□□□□□ -1.32
USP54-210ENST00000466048 MRPL14Q6P1L8 145 aaKnown RBP6.81□□□□□ -1.32
USP54-210ENST00000466048 CBLN3Q6UW01 205 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 UNQ6494/PRO21346Q6UXR6 183 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 TRILQ7L0X0 811 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.81□□□□□ -1.32
USP54-210ENST00000466048 NPEPL1Q8NDH3 523 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 OR2M7Q8NG81 312 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 HGDQ93099 445 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 POFUT1Q9H488 388 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 C12orf49Q9H741 205 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 ZNF275Q9NSD4 429 aaPredicted RBP6.81□□□□□ -1.32
USP54-210ENST00000466048 MED9Q9NWA0 146 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 TIMM10BQ9Y5J6 103 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 SCN2AQ99250 2005 aa6.81□□□□□ -1.32
USP54-210ENST00000466048 ZNF724A8MTY0 619 aa6.8□□□□□ -1.32
USP54-210ENST00000466048 EFSO43281 561 aa6.8□□□□□ -1.32
USP54-210ENST00000466048 CNOT4O95628 575 aaKnown RBP6.8□□□□□ -1.32
USP54-210ENST00000466048 CRHP06850 196 aa6.8□□□□□ -1.32
USP54-210ENST00000466048 TMIGD3P0DMS9 266 aaPredicted RBP6.8□□□□□ -1.32
USP54-210ENST00000466048 OR8G3PP0DMU2 310 aa6.8□□□□□ -1.32
USP54-210ENST00000466048 OR13C7P0DN81 318 aa6.8□□□□□ -1.32
USP54-210ENST00000466048 ADRA2CP18825 462 aa6.8□□□□□ -1.32
USP54-210ENST00000466048 RAD52P43351 418 aa6.8□□□□□ -1.32
USP54-210ENST00000466048 GABRA2P47869 451 aa6.8□□□□□ -1.32
USP54-210ENST00000466048 HTR5AP47898 357 aa6.8□□□□□ -1.32
USP54-210ENST00000466048 KCNJ3P48549 501 aa6.8□□□□□ -1.32
USP54-210ENST00000466048 HNRNPA3P51991 378 aaKnown RBP6.8□□□□□ -1.32
USP54-210ENST00000466048 OR10A3P58181 314 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms