RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 MARC2Q969Z3 335 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 RAB3CQ96E17 227 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 TMEM59Q9BXS4 323 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 REG4Q9BYZ8 158 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 NXT1Q9UKK6 140 aaKnown RBP7.32□□□□□ -1.24
CD44-208ENST00000428726 LIPGQ9Y5X9 500 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 A0A0A6YYH2 397 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 A6NJ64 397 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 AQP7P3A6NL99 342 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 GPR31O00270 319 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 SSX5O60225 188 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 CD63P08962 238 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 GABRA1P14867 456 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 FKBP2P26885 142 aaKnown RBP7.31□□□□□ -1.24
CD44-208ENST00000428726 ZFP36L1Q07352 338 aaKnown RBP7.31□□□□□ -1.24
CD44-208ENST00000428726 ENDOGQ14249 297 aaKnown RBP7.31□□□□□ -1.24
CD44-208ENST00000428726 IL11RAQ14626 422 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 MICBQ29980 383 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 HES3Q5TGS1 186 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 ZNF660Q6AZW8 331 aaPredicted RBP7.31□□□□□ -1.24
CD44-208ENST00000428726 SLC16A14Q7RTX9 510 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 HDDC2Q7Z4H3 204 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 DEFB124Q8NES8 71 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 GPX8Q8TED1 209 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 PTX4Q96A99 478 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 LRRC46Q96FV0 321 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 PLPPR2Q96GM1 343 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 PPA2Q9H2U2 334 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 WDR54Q9H977 334 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 FN3KRPQ9HA64 309 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 ASF1BQ9NVP2 202 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 SESN1Q9Y6P5 492 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 CUBNO60494 3623 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 LOC390937A0A1W2PQ73 354 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 METTL21EPA6NDL7 271 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 LILRA1O75019 489 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 SNAPC5O75971 98 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 CSNK2A1P68400 391 aaPredicted RBP7.31□□□□□ -1.24
CD44-208ENST00000428726 SLC35A1P78382 337 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 RIPPLY1Q0D2K3 151 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 PHLDA2Q53GA4 152 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 C1orf100Q5SVJ3 147 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 RGS7BPQ6MZT1 257 aaPredicted RBP7.31□□□□□ -1.24
CD44-208ENST00000428726 CXorf67Q86X51 503 aaPredicted RBP7.31□□□□□ -1.24
CD44-208ENST00000428726 CBLN2Q8IUK8 224 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 SKA3Q8IX90 412 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 GPR137CQ8N3F9 429 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 DTWD2Q8NBA8 298 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 CSNK2A3Q8NEV1 391 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 OR1S1Q8NH92 325 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 SLC25A43Q8WUT9 341 aaPredicted RBP7.31□□□□□ -1.24
CD44-208ENST00000428726 MRGPRFQ96AM1 343 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 SLCO5A1Q9H2Y9 848 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 SCPEP1Q9HB40 452 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 PNRC2Q9NPJ4 139 aaKnown RBP7.31□□□□□ -1.24
CD44-208ENST00000428726 DCHS2Q6V1P9 2916 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 ZGRF1Q86YA3 2104 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 MED12LQ86YW9 2145 aa7.31□□□□□ -1.24
CD44-208ENST00000428726 C5orf49A4QMS7 147 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 MFSD2BA6NFX1 497 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 F8VVB4 439 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 F8VWA3 439 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 M0R296 226 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 CDX4O14627 284 aaPredicted RBP7.3□□□□□ -1.24
CD44-208ENST00000428726 SGCEO43556 437 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 TLX3O43711 291 aaPredicted RBP7.3□□□□□ -1.24
CD44-208ENST00000428726 GIPP09681 153 aaPredicted RBP7.3□□□□□ -1.24
CD44-208ENST00000428726 MGMTP16455 207 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 AMY2BP19961 511 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 MSR1P21757 451 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 ADH6P28332 368 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 EIF1P41567 113 aaKnown RBP7.3□□□□□ -1.24
CD44-208ENST00000428726 NPBWR2P48146 333 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 MLF1P58340 268 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 TAS2R19P59542 299 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 S100A10P60903 97 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 SRSF3P84103 164 aaKnown RBP7.3□□□□□ -1.24
CD44-208ENST00000428726 SCRN3Q0VDG4 424 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 ZNF169Q14929 603 aaPredicted RBP7.3□□□□□ -1.24
CD44-208ENST00000428726 HIKESHIQ53FT3 197 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 SLC25A47Q6Q0C1 308 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 PDZD9Q8IXQ8 264 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 C17orf78Q8N4C9 275 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 PAQR8Q8TEZ7 354 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 SGK3Q96BR1 496 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 LPAR5Q9H1C0 372 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 LDAHQ9H6V9 325 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 SLC7A10Q9NS82 523 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 EHFQ9NZC4 300 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 LRRC3CA6NJW4 275 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 F5H0A9 414 aaPredicted RBP7.3□□□□□ -1.24
CD44-208ENST00000428726 NTN3O00634 580 aaPredicted RBP7.3□□□□□ -1.24
CD44-208ENST00000428726 LDLRAD4O15165 306 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 EIF3GO75821 320 aaKnown RBP eCLIP7.3□□□□□ -1.24
CD44-208ENST00000428726 ATG12O94817 140 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 DKK1O94907 266 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 SP9P0CG40 484 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 C4BPBP20851 252 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 CD34P28906 385 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 OR3A2P47893 321 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms