RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 PHYHD1Q5SRE7 291 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 RPUSD3Q6P087 351 aaKnown RBP12.92□□□□□ -0.34
USP4-203ENST00000415188 COMMD7Q86VX2 200 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 FAM89BQ8N5H3 189 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 ZIC4Q8N9L1 334 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 OR4S1Q8NGB4 309 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 OR52H1Q8NGJ2 320 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 SCARB1Q8WTV0 552 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 CMBLQ96DG6 245 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 CPNE2Q96FN4 548 aaPredicted RBP12.92□□□□□ -0.34
USP4-203ENST00000415188 SCGB3A2Q96PL1 93 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 ZNF385AQ96PM9 386 aaKnown RBP12.92□□□□□ -0.34
USP4-203ENST00000415188 UCN2Q96RP3 112 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 GPER1Q99527 375 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 OCSTAMPQ9BR26 566 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 FXYD6Q9H0Q3 95 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 OR10A2Q9H208 303 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 NOTCH2Q04721 2471 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 A0A0D9SG52 128 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 CEACAM18A8MTB9 384 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 LINC01387J3KSC0 135 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 M0R135 149 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 MFNGO00587 321 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 TNFSF11O14788 317 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 SMAD9O15198 467 aaKnown RBP12.91□□□□□ -0.34
USP4-203ENST00000415188 SHOXO15266 292 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 ARPC5O15511 151 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 SSX5O60225 188 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 FCER2P06734 321 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 CST2P09228 141 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 NAT2P11245 290 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 SLC25A4P12235 298 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 GNB3P16520 340 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 RPS27AP62979 156 aaKnown RBP12.91□□□□□ -0.34
USP4-203ENST00000415188 ZNF324BQ6AW86 544 aaPredicted RBP12.91□□□□□ -0.34
USP4-203ENST00000415188 ZNF787Q6DD87 383 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 DRAM2Q6UX65 266 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 RFPL4BQ6ZWI9 263 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 GPR137CQ8N3F9 429 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 MITD1Q8WV92 249 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 ZNF799Q96GE5 643 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 LYZL4Q96KX0 146 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 PHB2Q99623 299 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 RBM24Q9BX46 236 aaKnown RBP12.91□□□□□ -0.34
USP4-203ENST00000415188 CHST5Q9GZS9 411 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 KCNK7Q9Y2U2 307 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 NOP16Q9Y3C1 178 aaKnown RBP12.91□□□□□ -0.34
USP4-203ENST00000415188 A0A0A6YYD4 124 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 IGKV1-9A0A0C4DH69 117 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 HLA-AP01891 365 aaKnown RBP12.91□□□□□ -0.34
USP4-203ENST00000415188 HRH1P35367 487 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 SCRN3Q0VDG4 424 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 ZNF345Q14585 488 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 NKPD1Q17RQ9 610 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 ABHD17BQ5VST6 288 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 NSUN5P2Q63ZY6 315 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 ABLIM2Q6H8Q1 611 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 GSG1LQ6UXU4 331 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 SLC16A14Q7RTX9 510 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 SLC51BQ86UW2 128 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 HOGA1Q86XE5 327 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 OR6K3Q8NGY3 331 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 OR4K15Q8NH41 348 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 SOX7Q9BT81 388 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 TM2D1Q9BX74 207 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 SRXN1Q9BYN0 137 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 ARL6Q9H0F7 186 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 ZNF224Q9NZL3 707 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 COMMD9Q9P000 198 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 ZNF391Q9UJN7 358 aa12.91□□□□□ -0.34
USP4-203ENST00000415188 ZGRF1Q86YA3 2104 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 TEX15Q9BXT5 2789 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 IGHV3-15A0A0B4J1V0 119 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 A0A0B4J2A0 478 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 C9orf170A2RU37 121 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 OR5H15A6NDH6 313 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 G3V3Y1 287 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 CRTAPO75718 401 aaPredicted RBP12.9□□□□□ -0.34
USP4-203ENST00000415188 PTGFRP43088 359 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 SLC6A9P48067 706 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 TDGF1P3P51864 188 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 UBA52P62987 128 aaKnown RBP12.9□□□□□ -0.34
USP4-203ENST00000415188 SORDQ00796 357 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 KISS1Q15726 138 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 TOR2AQ5JU69 321 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 PDSS1Q5T2R2 415 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 RIPPLY2Q5TAB7 128 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 CD163Q86VB7 1156 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 GVQW1Q8N7I0 195 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 TMEM104Q8NE00 496 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 OR2V1Q8NHB1 315 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 OR14L1PQ8NHC6 308 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 WDR89Q96FK6 387 aaPredicted RBP12.9□□□□□ -0.34
USP4-203ENST00000415188 NICN1Q9BSH3 213 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 MFFQ9GZY8 342 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 SHPKQ9UHJ6 478 aa12.9□□□□□ -0.34
USP4-203ENST00000415188 DIDO1Q9BTC0 2240 aaKnown RBP12.89□□□□□ -0.35
USP4-203ENST00000415188 TRAV14DV4A0A0A6YYC5 116 aa12.89□□□□□ -0.35
USP4-203ENST00000415188 FOXI3A8MTJ6 420 aaPredicted RBP12.89□□□□□ -0.35
USP4-203ENST00000415188 SERPINE3A8MV23 424 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms