RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 SLC7A5P2Q9GIP4 190 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 HRH4Q9H3N8 390 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 GPR84Q9NQS5 396 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 SOHLH2Q9NX45 425 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 FBXL17Q9UF56 701 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 PIAS3Q9Y6X2 628 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 A0A087WZY1 265 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 CLEC18AA5D8T8 446 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 A6NJY4 79 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 SHISA7A6NL88 538 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 AQP7P3A6NL99 342 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 C9JQL5 133 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 H3BSH0 61 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 RAB5AP20339 215 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 NFYBP25208 207 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 CD27P26842 260 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 RGS19P49795 217 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 AKR1D1P51857 326 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 CSNK2A1P68400 391 aaPredicted RBP5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 H3F3AP84243 136 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 TMEM187Q14656 261 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 SLC9A3R2Q15599 337 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 KRTAP27-1Q3LI81 207 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 CHRFAM7AQ494W8 412 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 WDR74Q6RFH5 385 aaPredicted RBP5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 PLXDC2Q6UX71 529 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 TTLL10Q6ZVT0 673 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 RABEPKQ7Z6M1 372 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 PLXDC1Q8IUK5 500 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 FAM185AQ8N0U4 392 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 FADS6Q8N9I5 356 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 CLEC18CQ8NCF0 446 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 CSNK2A3Q8NEV1 391 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 MARS2Q96GW9 593 aaKnown RBP5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 FOXN4Q96NZ1 517 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 BCO1Q9HAY6 547 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 GSN-AS1Q9NRJ2 163 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 EHFQ9NZC4 300 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 ANXA10Q9UJ72 324 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 KCNIP3Q9Y2W7 256 aa5.03□□□□□ -1.6
CCDC88A-203ENST00000412148 C7orf77A4D0Y5 90 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 YKT6O15498 198 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 TGOLN2O43493 480 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 CDS2O95674 445 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 IGHV2-70P01814 119 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 PF4P02776 101 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 GIMD1P0DJR0 217 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 IL11P20809 199 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 GLRA1P23415 457 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 ACKR3P25106 362 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 CD80P33681 288 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 PTGDSP41222 190 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 OR1D4P47884 311 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 GFERP55789 205 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 CLRN1P58418 232 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 POLR2GP62487 172 aaKnown RBP eCLIP5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 SLC35A1P78382 337 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 FOXF1Q12946 379 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 MYBPHQ13203 477 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 ARFRP1Q13795 201 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 GUK1Q16774 197 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 IAH1Q2TAA2 248 aaPredicted RBP5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 ACSF3Q4G176 576 aaPredicted RBP5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 RHBDD2Q6NTF9 364 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 ABHD12BQ7Z5M8 362 aaPredicted RBP5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 Q8NFD4 153 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 CADM4Q8NFZ8 388 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 OR13D1Q8NGV5 346 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 OR1L3Q8NH93 324 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 POC1BQ8TC44 478 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 ROBO4Q8WZ75 1007 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 TECTBQ96PL2 329 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 SLC35B3Q9H1N7 401 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 TMPRSS5Q9H3S3 457 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 NAA60Q9H7X0 242 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 CLEC1BQ9P126 229 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 RALGAPA1Q6GYQ0 2036 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 LOC100509620A0A075B734 347 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 CCDC163A0A0D9SF12 145 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 FAM90A10PA6NDY2 464 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 FAM90A18PA6NE21 464 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 FAM90A16PA6NEW6 464 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 FAM90A20PA6NIJ5 464 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 FAM90A8PA6NJQ4 464 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 FAM90A7PA6NKC0 464 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 FAM90A22PA8MWA6 464 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 FAM90A12PA8MX19 464 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 FAM90A5PA8MXJ8 464 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 FAM90A23PA8MXZ1 464 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 K7N7A8 449 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 MASP2O00187 686 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 AP4M1O00189 453 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 DNPH1O43598 174 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 TLX3O43711 291 aaPredicted RBP5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 EFNA2O43921 213 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 CRTAPO75718 401 aaPredicted RBP5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 PIAS2O75928 621 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 FARS2O95363 451 aaKnown RBP5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 TSPAN15O95858 294 aa5.02□□□□□ -1.61
CCDC88A-203ENST00000412148 MBPP02686 304 aaPredicted RBP5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms