RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 KCTD8Q6ZWB6 473 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 ZNF786Q8N393 782 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 SLC22A24Q8N4F4 322 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 NUP37Q8NFH4 326 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 OR51A7Q8NH64 312 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 OR5K1Q8NHB7 308 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 TMEM54Q969K7 222 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 FEVQ99581 238 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 NEURL2Q9BR09 285 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 RHNO1Q9BSD3 238 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 TRAF4Q9BUZ4 470 aaPredicted RBP5.35□□□□□ -1.55
USP40-202ENST00000409945 CACNG6Q9BXT2 260 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 RSPO3Q9BXY4 272 aaPredicted RBP5.35□□□□□ -1.55
USP40-202ENST00000409945 RAB1BQ9H0U4 201 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 CDH20Q9HBT6 801 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 DNAJC4Q9NNZ3 241 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 IL1RAPQ9NPH3 570 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 ZNF701Q9NV72 531 aaPredicted RBP5.35□□□□□ -1.55
USP40-202ENST00000409945 ARID1AO14497 2285 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 ROS1P08922 2347 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 A0A087WUU8 490 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 E7EQL1 145 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 ATP6V1G2-DDX39BF2Z307 99 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 hCG_2039718K7EN88 272 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 OR10H3O60404 316 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 TRMUO75648 421 aaKnown RBP5.35□□□□□ -1.55
USP40-202ENST00000409945 IGHMP01871 453 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 OPN1MWP04001 364 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 SOD3P08294 240 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 CD14P08571 375 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 CECR9P0C854 216 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 OPN1MW2P0DN77 364 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 OPN1MW3P0DN78 364 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 SOX6P35712 828 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 CDKN1AP38936 164 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 ALDH3B2P48448 385 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 HTD2P86397 168 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 IL18R1Q13478 541 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 IZUMO4Q1ZYL8 232 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 CLEC12BQ2HXU8 276 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 RPL13AP3Q6NVV1 102 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 TUBA1AQ71U36 451 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 MDP1Q86V88 176 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 ZDHHC21Q8IVQ6 265 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 C1orf174Q8IYL3 243 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 FAM86B1Q8N7N1 296 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 SYT14Q8NB59 555 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 NPEPL1Q8NDH3 523 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 ZNF555Q8NEP9 628 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 OR11H4Q8NGC9 324 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 OR52L1Q8NGH7 329 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 OCC1Q8TAD7 63 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 MCHR2Q969V1 340 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 FBXO17Q96EF6 278 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 NRBF2Q96F24 287 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 C17orf77Q96MU5 243 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 ZNF442Q9H7R0 627 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 SIAEQ9HAT2 523 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 DYNLRB1Q9NP97 96 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 MYOZ1Q9NP98 299 aaPredicted RBP5.35□□□□□ -1.55
USP40-202ENST00000409945 CA10Q9NS85 328 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 TMEM38BQ9NVV0 291 aa5.35□□□□□ -1.55
USP40-202ENST00000409945 EIF3KQ9UBQ5 218 aaKnown RBP5.35□□□□□ -1.55
USP40-202ENST00000409945 AKAP9Q99996 3911 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 F8P00451 2351 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 TRAV27A0A087WT01 109 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 CCDC160A6NGH7 325 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 C12orf71A8MTZ7 269 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 ZNF701M0R085 212 aaPredicted RBP5.34□□□□□ -1.55
USP40-202ENST00000409945 IGLV1-44P01699 117 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 HLA-HP01893 362 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 SERPINA5P05154 406 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 SLC6A6P31641 620 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 GPR4P46093 362 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 RIPPLY3P57055 190 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 DYNC1I2Q13409 638 aaKnown RBP5.34□□□□□ -1.55
USP40-202ENST00000409945 SNTB2Q13425 540 aaKnown RBP5.34□□□□□ -1.55
USP40-202ENST00000409945 SGCAQ16586 387 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 PGGHGQ32M88 737 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 RBM48Q5RL73 367 aaKnown RBP5.34□□□□□ -1.55
USP40-202ENST00000409945 C10orf128Q5T292 105 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 OR2T5Q6IEZ7 315 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 PODNL1Q6PEZ8 512 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 TBPL2Q6SJ96 375 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 ADCK1Q86TW2 530 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 C8orf59Q8N0T1 100 aaPredicted RBP5.34□□□□□ -1.55
USP40-202ENST00000409945 ARIH2OSQ8N7S6 290 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 WFDC11Q8NEX6 87 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 OR4K5Q8NGD3 323 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 OR2T29Q8NH02 315 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 OR52J3Q8NH60 311 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 SLC7A13Q8TCU3 470 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 SECTM1Q8WVN6 248 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 ST6GALNAC6Q969X2 333 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 SLAMF9Q96A28 289 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 TNFRSF13CQ96RJ3 184 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 BCL2L14Q9BZR8 327 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 GABARAPL1Q9H0R8 117 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 DAPK2Q9UIK4 370 aa5.34□□□□□ -1.55
USP40-202ENST00000409945 ZNF346Q9UL40 294 aaKnown RBP5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms