RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 SLC22A4Q9H015 551 aa13.2□□□□□ -0.3
CUX2-202ENST00000397643 C1orf123Q9NWV4 160 aa13.2□□□□□ -0.3
CUX2-202ENST00000397643 CYB5R1Q9UHQ9 305 aa13.2□□□□□ -0.3
CUX2-202ENST00000397643 RNASEK-C17orf49H0YIS7 233 aa13.19□□□□□ -0.3
CUX2-202ENST00000397643 SELENOFO60613 162 aa13.19□□□□□ -0.3
CUX2-202ENST00000397643 LCATP04180 440 aa13.19□□□□□ -0.3
CUX2-202ENST00000397643 MRPL3P09001 348 aaKnown RBP13.19□□□□□ -0.3
CUX2-202ENST00000397643 DBTP11182 482 aaKnown RBP13.19□□□□□ -0.3
CUX2-202ENST00000397643 NAA10P41227 235 aaPredicted RBP13.19□□□□□ -0.3
CUX2-202ENST00000397643 EFNB2P52799 333 aa13.19□□□□□ -0.3
CUX2-202ENST00000397643 DLX1P56177 255 aa13.19□□□□□ -0.3
CUX2-202ENST00000397643 CSNK2BP67870 215 aa13.19□□□□□ -0.3
CUX2-202ENST00000397643 ZNF91Q05481 1191 aa13.19□□□□□ -0.3
CUX2-202ENST00000397643 MALLQ13021 153 aa13.19□□□□□ -0.3
CUX2-202ENST00000397643 PCK2Q16822 640 aa13.19□□□□□ -0.3
CUX2-202ENST00000397643 ZNF454Q8N9F8 522 aa13.19□□□□□ -0.3
CUX2-202ENST00000397643 OR51G2Q8NGK0 314 aa13.19□□□□□ -0.3
CUX2-202ENST00000397643 MRAPQ8TCY5 172 aa13.19□□□□□ -0.3
CUX2-202ENST00000397643 NPRL2Q8WTW4 380 aa13.19□□□□□ -0.3
CUX2-202ENST00000397643 ST8SIA4Q92187 359 aa13.19□□□□□ -0.3
CUX2-202ENST00000397643 MNTQ99583 582 aa13.19□□□□□ -0.3
CUX2-202ENST00000397643 ATF6BQ99941 703 aa13.19□□□□□ -0.3
CUX2-202ENST00000397643 YIPF3Q9GZM5 350 aa13.19□□□□□ -0.3
CUX2-202ENST00000397643 AMBNQ9NP70 447 aa13.19□□□□□ -0.3
CUX2-202ENST00000397643 SIRT7Q9NRC8 400 aa13.19□□□□□ -0.3
CUX2-202ENST00000397643 SIGLEC9Q9Y336 463 aa13.19□□□□□ -0.3
CUX2-202ENST00000397643 IGHV3OR15-7A0A075B7D8 119 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 IRGMA1A4Y4 181 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 BTBD17A6NE02 478 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 GMDSO60547 372 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 GABRA5P31644 462 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 CXCR4P61073 352 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 ZNF92Q03936 586 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 MED21Q13503 144 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 EIF2B1Q14232 305 aaKnown RBP13.18□□□□□ -0.3
CUX2-202ENST00000397643 SMN1Q16637 294 aaKnown RBP13.18□□□□□ -0.3
CUX2-202ENST00000397643 SNAI3Q3KNW1 292 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 KLHL22Q53GT1 634 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 C6orf141Q5SZD1 244 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 Q6ZTK2 550 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 MRPL21Q7Z2W9 205 aaKnown RBP13.18□□□□□ -0.3
CUX2-202ENST00000397643 DPY19L4Q7Z388 723 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 Q8N7P7 452 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 BPIFB6Q8NFQ5 453 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 PPP1R35Q8TAP8 253 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 TNFRSF14Q92956 283 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 PPA2Q9H2U2 334 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 ADGRL4Q9HBW9 690 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 ONECUT1Q9UBC0 465 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 LAMP5Q9UJQ1 280 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 FOXJ3Q9UPW0 622 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 CAB39Q9Y376 341 aaPredicted RBP13.18□□□□□ -0.3
CUX2-202ENST00000397643 NOP16Q9Y3C1 178 aaKnown RBP13.18□□□□□ -0.3
CUX2-202ENST00000397643 LRRC42Q9Y546 428 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 TMEM14AQ9Y6G1 99 aa13.18□□□□□ -0.3
CUX2-202ENST00000397643 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.17□□□□□ -0.3
CUX2-202ENST00000397643 NPFFO15130 113 aa13.17□□□□□ -0.3
CUX2-202ENST00000397643 FADS2O95864 444 aaKnown RBP13.17□□□□□ -0.3
CUX2-202ENST00000397643 RPS27P42677 84 aaKnown RBP13.17□□□□□ -0.3
CUX2-202ENST00000397643 RAB40BQ12829 278 aa13.17□□□□□ -0.3
CUX2-202ENST00000397643 ECH1Q13011 328 aa13.17□□□□□ -0.3
CUX2-202ENST00000397643 KLRD1Q13241 179 aa13.17□□□□□ -0.3
CUX2-202ENST00000397643 DCXRQ7Z4W1 244 aa13.17□□□□□ -0.3
CUX2-202ENST00000397643 SLC35F2Q8IXU6 374 aa13.17□□□□□ -0.3
CUX2-202ENST00000397643 PNKDQ8N490 385 aa13.17□□□□□ -0.3
CUX2-202ENST00000397643 C11orf44Q8N8P7 122 aa13.17□□□□□ -0.3
CUX2-202ENST00000397643 OR5R1Q8NH85 324 aa13.17□□□□□ -0.3
CUX2-202ENST00000397643 OR2AE1Q8NHA4 323 aa13.17□□□□□ -0.3
CUX2-202ENST00000397643 OTOSQ8NHW6 89 aa13.17□□□□□ -0.3
CUX2-202ENST00000397643 LGALS12Q96DT0 336 aa13.17□□□□□ -0.3
CUX2-202ENST00000397643 PLCXD1Q9NUJ7 323 aa13.17□□□□□ -0.3
CUX2-202ENST00000397643 MRPS18AQ9NVS2 196 aaKnown RBP13.17□□□□□ -0.3
CUX2-202ENST00000397643 SCN3BQ9NY72 215 aa13.17□□□□□ -0.3
CUX2-202ENST00000397643 MRPL15Q9P015 296 aaKnown RBP13.17□□□□□ -0.3
CUX2-202ENST00000397643 EXOGQ9Y2C4 368 aaKnown RBP13.17□□□□□ -0.3
CUX2-202ENST00000397643 A0A1W2PRD5 423 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 A0A1W2PRF3 423 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 A0A1W2PRM7 423 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 MEGF11A6BM72 1044 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 EFCAB10A6NFE3 127 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 A6NLC8 198 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 ZNF670-ZNF695F2Z2N8 137 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 M0R135 149 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 APOL3O95236 402 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 OR2T7P0C7T2 308 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 SAA4P35542 130 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 LOXL3P58215 753 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 ACTC1P68032 377 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 ACTA1P68133 377 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 OXLD1Q5BKU9 147 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 WDR38Q5JTN6 314 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 LAIR2Q6ISS4 152 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 C1orf122Q6ZSJ8 110 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 WDR86Q86TI4 376 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 C11orf53Q8IXP5 236 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 FAM216BQ8N7L0 139 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 OR10H4Q8NGA5 316 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 OR2T27Q8NH04 317 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 THEM6Q8WUY1 208 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 ASB17Q8WXJ9 295 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms