RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 OR52N1Q8NH53 320 aa18.15■□□□□ 0.5
CLN3-207ENST00000395653 OR8B2Q96RD0 313 aa18.15■□□□□ 0.5
CLN3-207ENST00000395653 ANKRD60Q9BZ19 345 aa18.15■□□□□ 0.5
CLN3-207ENST00000395653 FKBP14Q9NWM8 211 aa18.15■□□□□ 0.5
CLN3-207ENST00000395653 PQLC2LA1A4F0 135 aa18.14■□□□□ 0.49
CLN3-207ENST00000395653 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP18.14■□□□□ 0.49
CLN3-207ENST00000395653 ZFPL1O95159 310 aa18.14■□□□□ 0.49
CLN3-207ENST00000395653 SERPINA3P01011 423 aa18.14■□□□□ 0.49
CLN3-207ENST00000395653 HNF1AP20823 631 aa18.14■□□□□ 0.49
CLN3-207ENST00000395653 MYF6P23409 242 aa18.14■□□□□ 0.49
CLN3-207ENST00000395653 ZFP36P26651 326 aaKnown RBP18.14■□□□□ 0.49
CLN3-207ENST00000395653 LCN2P80188 198 aa18.14■□□□□ 0.49
CLN3-207ENST00000395653 MICBQ29980 383 aa18.14■□□□□ 0.49
CLN3-207ENST00000395653 C6orf141Q5SZD1 244 aa18.14■□□□□ 0.49
CLN3-207ENST00000395653 AHSA2Q719I0 299 aa18.14■□□□□ 0.49
CLN3-207ENST00000395653 FAM90A1Q86YD7 464 aa18.14■□□□□ 0.49
CLN3-207ENST00000395653 ZNF573Q86YE8 665 aa18.14■□□□□ 0.49
CLN3-207ENST00000395653 AQP3Q92482 292 aa18.14■□□□□ 0.49
CLN3-207ENST00000395653 C12orf43Q96C57 262 aaKnown RBP18.14■□□□□ 0.49
CLN3-207ENST00000395653 POM121Q96HA1 1249 aa18.14■□□□□ 0.49
CLN3-207ENST00000395653 SSBP3Q9BWW4 388 aaPredicted RBP18.14■□□□□ 0.49
CLN3-207ENST00000395653 BEX2Q9BXY8 128 aa18.14■□□□□ 0.49
CLN3-207ENST00000395653 COMMD4Q9H0A8 199 aa18.14■□□□□ 0.49
CLN3-207ENST00000395653 CLEC2DQ9UHP7 191 aa18.14■□□□□ 0.49
CLN3-207ENST00000395653 SLC7A11Q9UPY5 501 aa18.14■□□□□ 0.49
CLN3-207ENST00000395653 A0A0G2JMP0 313 aa18.13■□□□□ 0.49
CLN3-207ENST00000395653 A0A0X1KG70 313 aa18.13■□□□□ 0.49
CLN3-207ENST00000395653 KIAA1324LA8MWY0 1029 aaPredicted RBP18.13■□□□□ 0.49
CLN3-207ENST00000395653 TNFRSF13BO14836 293 aaPredicted RBP18.13■□□□□ 0.49
CLN3-207ENST00000395653 GATA3P23771 443 aa18.13■□□□□ 0.49
CLN3-207ENST00000395653 GTF2A1P52655 376 aaPredicted RBP18.13■□□□□ 0.49
CLN3-207ENST00000395653 UBE2V2Q15819 145 aa18.13■□□□□ 0.49
CLN3-207ENST00000395653 RPL22L1Q6P5R6 122 aaKnown RBP18.13■□□□□ 0.49
CLN3-207ENST00000395653 HAGHLQ6PII5 290 aaPredicted RBP18.13■□□□□ 0.49
CLN3-207ENST00000395653 LYPD2Q6UXB3 125 aa18.13■□□□□ 0.49
CLN3-207ENST00000395653 STX19Q8N4C7 294 aa18.13■□□□□ 0.49
CLN3-207ENST00000395653 OR4M2Q8NGB6 313 aa18.13■□□□□ 0.49
CLN3-207ENST00000395653 OR10AC1Q8NH08 325 aa18.13■□□□□ 0.49
CLN3-207ENST00000395653 OR5AK2Q8NH90 309 aa18.13■□□□□ 0.49
CLN3-207ENST00000395653 RPS4Y2Q8TD47 263 aa18.13■□□□□ 0.49
CLN3-207ENST00000395653 ADAT3Q96EY9 351 aaPredicted RBP18.13■□□□□ 0.49
CLN3-207ENST00000395653 TRBV2A0A0J9YWF9 115 aa18.12■□□□□ 0.49
CLN3-207ENST00000395653 AKR7A2O43488 359 aa18.12■□□□□ 0.49
CLN3-207ENST00000395653 RHBDL1O75783 438 aa18.12■□□□□ 0.49
CLN3-207ENST00000395653 ZNF20P17024 532 aa18.12■□□□□ 0.49
CLN3-207ENST00000395653 HAAOP46952 286 aa18.12■□□□□ 0.49
CLN3-207ENST00000395653 PITPNBP48739 271 aa18.12■□□□□ 0.49
CLN3-207ENST00000395653 GNB2P62879 340 aa18.12■□□□□ 0.49
CLN3-207ENST00000395653 CDK5R1Q15078 307 aa18.12■□□□□ 0.49
CLN3-207ENST00000395653 CNN3Q15417 329 aaKnown RBP18.12■□□□□ 0.49
CLN3-207ENST00000395653 XAF1Q6GPH4 301 aa18.12■□□□□ 0.49
CLN3-207ENST00000395653 UTS2BQ765I0 119 aa18.12■□□□□ 0.49
CLN3-207ENST00000395653 OR51A4Q8NGJ6 313 aa18.12■□□□□ 0.49
CLN3-207ENST00000395653 ZNF671Q8TAW3 534 aa18.12■□□□□ 0.49
CLN3-207ENST00000395653 FGGYQ96C11 551 aa18.12■□□□□ 0.49
CLN3-207ENST00000395653 PDCD1LG2Q9BQ51 273 aa18.12■□□□□ 0.49
CLN3-207ENST00000395653 BABAM2Q9NXR7 383 aa18.12■□□□□ 0.49
CLN3-207ENST00000395653 ERVK-18Q9QC07 812 aa18.12■□□□□ 0.49
CLN3-207ENST00000395653 IGHV3OR15-7A0A075B7D8 119 aa18.11■□□□□ 0.49
CLN3-207ENST00000395653 J3QLI3 93 aa18.11■□□□□ 0.49
CLN3-207ENST00000395653 J3QT63 122 aa18.11■□□□□ 0.49
CLN3-207ENST00000395653 SLC1A7O00341 560 aa18.11■□□□□ 0.49
CLN3-207ENST00000395653 GYPAP02724 150 aa18.11■□□□□ 0.49
CLN3-207ENST00000395653 C21orf33P30042 268 aaPredicted RBP18.11■□□□□ 0.49
CLN3-207ENST00000395653 VHLP40337 213 aa18.11■□□□□ 0.49
CLN3-207ENST00000395653 FUT6P51993 359 aa18.11■□□□□ 0.49
CLN3-207ENST00000395653 DCAF12L2Q5VW00 463 aa18.11■□□□□ 0.49
CLN3-207ENST00000395653 ZNF485Q8NCK3 441 aa18.11■□□□□ 0.49
CLN3-207ENST00000395653 OR13C3Q8NGS6 347 aa18.11■□□□□ 0.49
CLN3-207ENST00000395653 SCN3BQ9NY72 215 aa18.11■□□□□ 0.49
CLN3-207ENST00000395653 KAAG1Q9UBP8 84 aa18.11■□□□□ 0.49
CLN3-207ENST00000395653 CLN8Q9UBY8 286 aa18.11■□□□□ 0.49
CLN3-207ENST00000395653 OR5V1Q9UGF6 321 aa18.11■□□□□ 0.49
CLN3-207ENST00000395653 RRP15Q9Y3B9 282 aaKnown RBP18.11■□□□□ 0.49
CLN3-207ENST00000395653 PHF1O43189 567 aaPredicted RBP18.1■□□□□ 0.49
CLN3-207ENST00000395653 ADAM20O43506 726 aa18.1■□□□□ 0.49
CLN3-207ENST00000395653 FAM157CP0CG43 387 aa18.1■□□□□ 0.49
CLN3-207ENST00000395653 MPZP25189 248 aa18.1■□□□□ 0.49
CLN3-207ENST00000395653 NPY4RP50391 375 aa18.1■□□□□ 0.49
CLN3-207ENST00000395653 FAHD2BQ6P2I3 314 aaPredicted RBP18.1■□□□□ 0.49
CLN3-207ENST00000395653 ZNF841Q6ZN19 808 aa18.1■□□□□ 0.49
CLN3-207ENST00000395653 DNAAF1Q8NEP3 725 aa18.1■□□□□ 0.49
CLN3-207ENST00000395653 TRMT10AQ8TBZ6 339 aaKnown RBP18.1■□□□□ 0.49
CLN3-207ENST00000395653 GATAD2BQ8WXI9 593 aa18.1■□□□□ 0.49
CLN3-207ENST00000395653 FAHD2AQ96GK7 314 aa18.1■□□□□ 0.49
CLN3-207ENST00000395653 WDR13Q9H1Z4 485 aa18.1■□□□□ 0.49
CLN3-207ENST00000395653 CTSZQ9UBR2 303 aa18.1■□□□□ 0.49
CLN3-207ENST00000395653 RAB26Q9ULW5 256 aa18.1■□□□□ 0.49
CLN3-207ENST00000395653 POLDIP2Q9Y2S7 368 aa18.1■□□□□ 0.49
CLN3-207ENST00000395653 FAM230AA0A1W2PPH8 454 aa18.09■□□□□ 0.49
CLN3-207ENST00000395653 OGG1O15527 345 aa18.09■□□□□ 0.49
CLN3-207ENST00000395653 GLRA1P23415 457 aa18.09■□□□□ 0.49
CLN3-207ENST00000395653 WDR25Q64LD2 544 aaPredicted RBP18.09■□□□□ 0.49
CLN3-207ENST00000395653 NPRL2Q8WTW4 380 aa18.09■□□□□ 0.49
CLN3-207ENST00000395653 SMIM19Q96E16 107 aa18.09■□□□□ 0.49
CLN3-207ENST00000395653 SEH1LQ96EE3 360 aa18.09■□□□□ 0.49
CLN3-207ENST00000395653 BORCS8Q96FH0 119 aa18.09■□□□□ 0.49
CLN3-207ENST00000395653 PKIBQ9C010 78 aa18.09■□□□□ 0.49
CLN3-207ENST00000395653 DNAJB11Q9UBS4 358 aa18.09■□□□□ 0.49
CLN3-207ENST00000395653 IGKV1-9A0A0C4DH69 117 aa18.08■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms