RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 GPR137CQ8N3F9 429 aa11.65□□□□□ -0.54
CCDC3-202ENST00000378839 PPA2Q9H2U2 334 aa11.65□□□□□ -0.54
CCDC3-202ENST00000378839 CEACAM18A8MTB9 384 aa11.65□□□□□ -0.54
CCDC3-202ENST00000378839 ADAP1O75689 374 aa11.65□□□□□ -0.54
CCDC3-202ENST00000378839 ANKRD55Q3KP44 614 aa11.65□□□□□ -0.54
CCDC3-202ENST00000378839 KCNRGQ8N5I3 272 aa11.65□□□□□ -0.54
CCDC3-202ENST00000378839 ASB13Q8WXK3 278 aa11.65□□□□□ -0.54
CCDC3-202ENST00000378839 SIGLEC12Q96PQ1 595 aa11.65□□□□□ -0.54
CCDC3-202ENST00000378839 PHB2Q99623 299 aa11.65□□□□□ -0.54
CCDC3-202ENST00000378839 VRK1Q99986 396 aaPredicted RBP11.65□□□□□ -0.54
CCDC3-202ENST00000378839 TM2D1Q9BX74 207 aa11.65□□□□□ -0.54
CCDC3-202ENST00000378839 OSGIN2Q9Y236 505 aa11.65□□□□□ -0.54
CCDC3-202ENST00000378839 FIGNL2A6NMB9 653 aa11.65□□□□□ -0.55
CCDC3-202ENST00000378839 H0YIZ8 118 aa11.65□□□□□ -0.55
CCDC3-202ENST00000378839 HPP00738 406 aa11.65□□□□□ -0.55
CCDC3-202ENST00000378839 RPS2P15880 293 aaKnown RBP11.65□□□□□ -0.55
CCDC3-202ENST00000378839 TBPP20226 339 aa11.65□□□□□ -0.55
CCDC3-202ENST00000378839 GLRA1P23415 457 aa11.65□□□□□ -0.55
CCDC3-202ENST00000378839 SERPINF1P36955 418 aa11.65□□□□□ -0.55
CCDC3-202ENST00000378839 ZNF84P51523 738 aa11.65□□□□□ -0.55
CCDC3-202ENST00000378839 SNU13P55769 128 aaKnown RBP11.65□□□□□ -0.55
CCDC3-202ENST00000378839 SLC9A3R2Q15599 337 aa11.65□□□□□ -0.55
CCDC3-202ENST00000378839 PNLIPRP3Q17RR3 467 aa11.65□□□□□ -0.55
CCDC3-202ENST00000378839 FAHD2BQ6P2I3 314 aaPredicted RBP11.65□□□□□ -0.55
CCDC3-202ENST00000378839 CLEC18BQ6UXF7 455 aa11.65□□□□□ -0.55
CCDC3-202ENST00000378839 PEG10Q86TG7 708 aaKnown RBP11.65□□□□□ -0.55
CCDC3-202ENST00000378839 INTS12Q96CB8 462 aaKnown RBP11.65□□□□□ -0.55
CCDC3-202ENST00000378839 FAHD2AQ96GK7 314 aa11.65□□□□□ -0.55
CCDC3-202ENST00000378839 REEP6Q96HR9 211 aa11.65□□□□□ -0.55
CCDC3-202ENST00000378839 RNF126Q9BV68 326 aa11.65□□□□□ -0.55
CCDC3-202ENST00000378839 WNT5BQ9H1J7 359 aa11.65□□□□□ -0.55
CCDC3-202ENST00000378839 LIME1Q9H400 295 aa11.65□□□□□ -0.55
CCDC3-202ENST00000378839 OR6C6A6NF89 314 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 DHRS7CA6NNS2 312 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 ZNF587BE7ETH6 402 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 NR2C1P13056 603 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 ARFRP1Q13795 201 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 SSPNQ14714 243 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 RAB11FIP2Q7L804 512 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 AAED1Q7RTV5 226 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 SKA3Q8IX90 412 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 OR1F12Q8NHA8 337 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 PP6455Q8WZ26 134 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.64□□□□□ -0.55
CCDC3-202ENST00000378839 MBD2Q9UBB5 411 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 LNP1A1A4G5 178 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 ZNF205O95201 554 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 UBBP0CG47 229 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 GABRR1P24046 479 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 RAB35Q15286 201 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 CEACAM16Q2WEN9 425 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 LPCAT3Q6P1A2 487 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 OR2V1Q8NHB1 315 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 DYRK2Q92630 601 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 RRNAD1Q96FB5 475 aaKnown RBP11.64□□□□□ -0.55
CCDC3-202ENST00000378839 URM1Q9BTM9 101 aaKnown RBP11.64□□□□□ -0.55
CCDC3-202ENST00000378839 ELL3Q9HB65 397 aaPredicted RBP11.64□□□□□ -0.55
CCDC3-202ENST00000378839 GPR160Q9UJ42 338 aa11.64□□□□□ -0.55
CCDC3-202ENST00000378839 IGKV1-12A0A0C4DH73 117 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 C13orf42A0A1B0GVH6 325 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 NEURL1O76050 574 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 IGKV1D-12P01611 117 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 AMY2BP19961 511 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 GDF1P27539 372 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 MPLP40238 635 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 LUMP51884 338 aaPredicted RBP11.63□□□□□ -0.55
CCDC3-202ENST00000378839 BRICD5Q6PL45 260 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 PNLDC1Q8NA58 520 aaKnown RBP11.63□□□□□ -0.55
CCDC3-202ENST00000378839 NAXEQ8NCW5 288 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 KCNE4Q8WWG9 221 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 SPTSSAQ969W0 71 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 BARX1Q9HBU1 254 aaPredicted RBP11.63□□□□□ -0.55
CCDC3-202ENST00000378839 FAM230AA0A1W2PPH8 454 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 GJE1A6NN92 205 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 SERPINA7P05543 415 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 GLAP06280 429 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 CST2P09228 141 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 FOXG1P55316 489 aaPredicted RBP11.63□□□□□ -0.55
CCDC3-202ENST00000378839 DAZAP2Q15038 168 aaPredicted RBP11.63□□□□□ -0.55
CCDC3-202ENST00000378839 CDCP2Q5VXM1 449 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 SULF2Q8IWU5 870 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 TMEM185AQ8NFB2 350 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 SEMA6DQ8NFY4 1073 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 OR5H2Q8NGV7 314 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 THOC3Q96J01 351 aaKnown RBP11.63□□□□□ -0.55
CCDC3-202ENST00000378839 Q96M66 194 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 CYB561P49447 251 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 RRADP55042 308 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 MTCP1P56278 107 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 ZNF92Q03936 586 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 TMEM128Q5BJH2 165 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 TMEM88Q6PEY1 159 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 OVCH2Q7RTZ1 564 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 GALNTL5Q7Z4T8 443 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 ARRDC1Q8N5I2 433 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 CPEB3Q8NE35 698 aaKnown RBP11.63□□□□□ -0.55
CCDC3-202ENST00000378839 CPT1CQ8TCG5 803 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 GPR35Q9HC97 309 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 MED9Q9NWA0 146 aa11.63□□□□□ -0.55
CCDC3-202ENST00000378839 CRIM1Q9NZV1 1036 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms