RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 SPI1P17947 270 aa11.15□□□□□ -0.62
VPS29-201ENST00000360579 RAB13P51153 203 aa11.15□□□□□ -0.62
VPS29-201ENST00000360579 DYNLT3P51808 116 aa11.15□□□□□ -0.62
VPS29-201ENST00000360579 KRTAP10-11P60412 298 aa11.15□□□□□ -0.62
VPS29-201ENST00000360579 GNG3P63215 75 aa11.15□□□□□ -0.62
VPS29-201ENST00000360579 EGFEM1PQ0D2K5 195 aa11.15□□□□□ -0.62
VPS29-201ENST00000360579 PLA1AQ53H76 456 aa11.15□□□□□ -0.62
VPS29-201ENST00000360579 TMEM200BQ69YZ2 307 aa11.15□□□□□ -0.62
VPS29-201ENST00000360579 C8orf82Q6P1X6 216 aaPredicted RBP11.15□□□□□ -0.62
VPS29-201ENST00000360579 HACD2Q6Y1H2 254 aa11.15□□□□□ -0.62
VPS29-201ENST00000360579 LHFPL4Q7Z7J7 247 aa11.15□□□□□ -0.62
VPS29-201ENST00000360579 ZNF561Q8N587 486 aa11.15□□□□□ -0.62
VPS29-201ENST00000360579 C11orf42Q8N5U0 333 aa11.15□□□□□ -0.62
VPS29-201ENST00000360579 OR13D1Q8NGV5 346 aa11.15□□□□□ -0.62
VPS29-201ENST00000360579 HPSE2Q8WWQ2 592 aa11.15□□□□□ -0.62
VPS29-201ENST00000360579 MCUR1Q96AQ8 359 aa11.15□□□□□ -0.62
VPS29-201ENST00000360579 C1orf21Q9H246 121 aa11.15□□□□□ -0.62
VPS29-201ENST00000360579 EGLN3Q9H6Z9 239 aa11.15□□□□□ -0.62
VPS29-201ENST00000360579 YY1AP1Q9H869 796 aa11.15□□□□□ -0.62
VPS29-201ENST00000360579 BRD7Q9NPI1 651 aa11.15□□□□□ -0.62
VPS29-201ENST00000360579 ZNF319Q9P2F9 582 aa11.15□□□□□ -0.62
VPS29-201ENST00000360579 TSSC4Q9Y5U2 329 aaPredicted RBP11.15□□□□□ -0.62
VPS29-201ENST00000360579 TCRBV4S1A1TA0A5B7 111 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 SYNGR1O43759 233 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 MTRF1O75570 445 aaKnown RBP11.14□□□□□ -0.63
VPS29-201ENST00000360579 ARG1P05089 322 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 GYPBP06028 91 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 COX4I1P13073 169 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 ACKR3P25106 362 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 AZGP1P25311 298 aaKnown RBP11.14□□□□□ -0.63
VPS29-201ENST00000360579 NUDT2P50583 147 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 GPM6AP51674 278 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 BLCAPP62952 87 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 CRMP1Q14194 572 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 SMIM21Q3B7S5 101 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 SHFQ7M4L6 423 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.14□□□□□ -0.63
VPS29-201ENST00000360579 DYNAPQ8N1N2 210 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 ITFG2Q969R8 447 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 PYURFQ96I23 114 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 INTS14Q96SY0 518 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 ABHD6Q9BV23 337 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 NMNAT2Q9BZQ4 307 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 OR51I2Q9H344 312 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 MUC13Q9H3R2 512 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 IL20Q9NYY1 176 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 ABCD2Q9UBJ2 740 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 BAIAP2Q9UQB8 552 aa11.14□□□□□ -0.63
VPS29-201ENST00000360579 ODF3BA8MYP8 253 aa11.13□□□□□ -0.63
VPS29-201ENST00000360579 IFNGP01579 166 aa11.13□□□□□ -0.63
VPS29-201ENST00000360579 H2BFMP0C1H6 154 aa11.13□□□□□ -0.63
VPS29-201ENST00000360579 RRM2P31350 389 aa11.13□□□□□ -0.63
VPS29-201ENST00000360579 OPRL1P41146 370 aa11.13□□□□□ -0.63
VPS29-201ENST00000360579 OR12D2P58182 307 aa11.13□□□□□ -0.63
VPS29-201ENST00000360579 SSX2Q16385 188 aa11.13□□□□□ -0.63
VPS29-201ENST00000360579 CEACAM21Q3KPI0 293 aa11.13□□□□□ -0.63
VPS29-201ENST00000360579 ZNF782Q6ZMW2 699 aaPredicted RBP11.13□□□□□ -0.63
VPS29-201ENST00000360579 CENPVQ7Z7K6 275 aaPredicted RBP11.13□□□□□ -0.63
VPS29-201ENST00000360579 LINC00471Q8N535 108 aa11.13□□□□□ -0.63
VPS29-201ENST00000360579 OR6N2Q8NGY6 317 aa11.13□□□□□ -0.63
VPS29-201ENST00000360579 OR2T27Q8NH04 317 aa11.13□□□□□ -0.63
VPS29-201ENST00000360579 FGF23Q9GZV9 251 aaPredicted RBP11.13□□□□□ -0.63
VPS29-201ENST00000360579 GORASP2Q9H8Y8 452 aa11.13□□□□□ -0.63
VPS29-201ENST00000360579 VIPAS39Q9H9C1 493 aa11.13□□□□□ -0.63
VPS29-201ENST00000360579 TBC1D23Q9NUY8 699 aa11.13□□□□□ -0.63
VPS29-201ENST00000360579 FGFR1OP2Q9NVK5 253 aa11.13□□□□□ -0.63
VPS29-201ENST00000360579 OR5B21A6NL26 309 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 RFPL4AA6NLU0 287 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 ZNF732B4DXR9 585 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 RFPL4AL1F8VTS6 287 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 KRT36O76013 467 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 RBP4P02753 201 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 SEMG1P04279 462 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 FABP3P05413 133 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 NHLRC4P0CG21 123 aaPredicted RBP11.12□□□□□ -0.63
VPS29-201ENST00000360579 CCL3L1P16619 93 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 SF3A3Q12874 501 aaKnown RBP eCLIP11.12□□□□□ -0.63
VPS29-201ENST00000360579 TMEM95Q3KNT9 176 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 SAMD4BQ5PRF9 694 aaKnown RBP11.12□□□□□ -0.63
VPS29-201ENST00000360579 ZNF626Q68DY1 528 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 ACP7Q6ZNF0 438 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 RASSF6Q6ZTQ3 369 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 CCDC121Q6ZUS5 278 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 KRT74Q7RTS7 529 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 C16orf82Q7Z2V1 217 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 PIGWQ7Z7B1 504 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 ERI1Q8IV48 349 aaKnown RBP11.12□□□□□ -0.63
VPS29-201ENST00000360579 OR2T33Q8NG76 320 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 OR11H6Q8NGC7 330 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 OR4M1Q8NGD0 313 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 OR4X2Q8NGF9 303 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 OR5A2Q8NGI9 324 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 FAM81AQ8TBF8 368 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 AQP3Q92482 292 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 AKR1E2Q96JD6 320 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 SPAG4Q9NPE6 437 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 INPP5EQ9NRR6 644 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 ZMAT5Q9UDW3 170 aaKnown RBP11.12□□□□□ -0.63
VPS29-201ENST00000360579 V9GYQ6 96 aa11.12□□□□□ -0.63
VPS29-201ENST00000360579 RIIAD1A6NNX1 92 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms