RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 FAM53BQ14153 422 aa17.48■□□□□ 0.39
CCDC88B-202ENST00000356786 PTP4A1Q93096 173 aa17.48■□□□□ 0.39
CCDC88B-202ENST00000356786 TMPRSS13Q9BYE2 586 aa17.48■□□□□ 0.39
CCDC88B-202ENST00000356786 DNAJB12Q9NXW2 375 aaKnown RBP17.48■□□□□ 0.39
CCDC88B-202ENST00000356786 NTN1O95631 604 aa17.48■□□□□ 0.39
CCDC88B-202ENST00000356786 NMBP08949 121 aa17.48■□□□□ 0.39
CCDC88B-202ENST00000356786 FUT3P21217 361 aa17.48■□□□□ 0.39
CCDC88B-202ENST00000356786 THBS4P35443 961 aa17.48■□□□□ 0.39
CCDC88B-202ENST00000356786 ERVFC1-1P60608 527 aa17.48■□□□□ 0.39
CCDC88B-202ENST00000356786 RAB35Q15286 201 aa17.48■□□□□ 0.39
CCDC88B-202ENST00000356786 NT5CQ8TCD5 201 aa17.48■□□□□ 0.39
CCDC88B-202ENST00000356786 CHST6Q9GZX3 395 aa17.48■□□□□ 0.39
CCDC88B-202ENST00000356786 DYNLRB1Q9NP97 96 aa17.48■□□□□ 0.39
CCDC88B-202ENST00000356786 FRG2CA6NGY1 282 aa17.48■□□□□ 0.39
CCDC88B-202ENST00000356786 ZNF891A8MT65 544 aaPredicted RBP17.48■□□□□ 0.39
CCDC88B-202ENST00000356786 LINC00696Q6ZRV3 163 aa17.48■□□□□ 0.39
CCDC88B-202ENST00000356786 GHITMQ9H3K2 345 aa17.48■□□□□ 0.39
CCDC88B-202ENST00000356786 CA10Q9NS85 328 aa17.48■□□□□ 0.39
CCDC88B-202ENST00000356786 C4orf47A7E2U8 309 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 PGA3P0DJD8 388 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 TBC1D28Q2M2D7 210 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 SLC25A30Q5SVS4 291 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 PRR27Q6MZM9 219 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 CDC20BQ86Y33 519 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 ZNF573Q86YE8 665 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 SH3BGRL2Q9UJC5 107 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 LRRC37AA6NMS7 1700 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 SH2D1BO14796 132 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 TCAPO15273 167 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 LIMK1P53667 647 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 FOXF1Q12946 379 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 MRGPRX4Q96LA9 322 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 M0R143 59 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 SLC31A2O15432 143 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 GPR12P47775 334 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 ZNF362Q5T0B9 420 aaPredicted RBP17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 FAM162BQ5T6X4 162 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 ETFRF1Q6IPR1 90 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 FAHD2BQ6P2I3 314 aaPredicted RBP17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 ZNF596Q8TC21 504 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 FAHD2AQ96GK7 314 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 CNTD2Q9H8S5 307 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 MRM2Q9UI43 246 aaKnown RBP17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 C5orf49A4QMS7 147 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 MAP1LC3B2A6NCE7 125 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 EPPINO95925 133 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 OR5G3P0C626 314 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 PDCD1Q15116 288 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 EXTL1Q92935 676 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 POM121Q96HA1 1249 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 ADAT1Q9BUB4 502 aaKnown RBP17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 MAP1LC3BQ9GZQ8 125 aa17.47■□□□□ 0.39
CCDC88B-202ENST00000356786 RBFOX3A6NFN3 312 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 PPP2CBP62714 309 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 PPP2CAP67775 309 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 LSRQ86X29 649 aaPredicted RBP17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 IL22RA2Q969J5 263 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 C8orf44Q96CB5 159 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 FAM122AQ96E09 287 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 PRR13Q9NZ81 148 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 PPIL1Q9Y3C6 166 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 GZMMP51124 257 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 CASP6P55212 293 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 COTL1Q14019 142 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 FZD2Q14332 565 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 C20orf196Q8IYI0 205 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 CYB561P49447 251 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 SULT1A1P50225 295 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 C6orf201Q7Z4U5 140 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 C17orf78Q8N4C9 275 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 LYRM2Q9NU23 88 aaPredicted RBP17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 ZFC3H1O60293 1989 aaKnown RBP17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 A0A096LPE4 126 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 A0A1W2PPZ6 126 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 PTBP3O95758 552 aaKnown RBP17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 CHRNA7P36544 502 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 PTGFRP43088 359 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 CLN3Q13286 438 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 LINC01555Q8NAE3 123 aa17.46■□□□□ 0.39
CCDC88B-202ENST00000356786 ADAM20O43506 726 aa17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 CT45A10P0DMU9 189 aa17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 OR8B8Q15620 311 aa17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 TMEM183BQ1AE95 376 aa17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 DGAT2L6Q6ZPD8 337 aa17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 VN1R1Q9GZP7 353 aa17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 PCDHGA9Q9Y5G4 932 aaKnown RBP17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 LIPGQ9Y5X9 500 aa17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 IGHV3-15A0A0B4J1V0 119 aa17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 A0A1W2PPE2 198 aa17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 F12P00748 615 aaPredicted RBP17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 KRASP01116 189 aa17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 B4GALT1P15291 398 aa17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 DEGS2Q6QHC5 323 aa17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 SNX22Q96L94 193 aa17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 OR8G1Q15617 311 aa17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 CLEC18BQ6UXF7 455 aa17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 CA5BP1Q8WTZ4 195 aa17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 PIK3IP1Q96FE7 263 aa17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 PACRGQ96M98 296 aaPredicted RBP17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 FAAP24Q9BTP7 215 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms