RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 FOLR2P14207 255 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 PRDX1Q06830 199 aaKnown RBP11.39□□□□□ -0.59
COL6A3-203ENST00000353578 KCNAB1Q14722 419 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 BTLAQ7Z6A9 289 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 NDUFAF3Q9BU61 184 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 COMMD5Q9GZQ3 224 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 CARHSP1Q9Y2V2 147 aaKnown RBP11.39□□□□□ -0.59
COL6A3-203ENST00000353578 CLEC12BQ2HXU8 276 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 OR2V2Q96R30 315 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 OCIAD1Q9NX40 245 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 FRS3O43559 492 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 SLC38A11Q08AI6 406 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 RPS4Y2Q8TD47 263 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 ST8SIA1Q92185 356 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 KLHDC7BQ96G42 594 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 POM121L2Q96KW2 1035 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 MS4A8Q9BY19 250 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 NGBQ9NPG2 151 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 NEU3Q9UQ49 428 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 CXorf1O96002 111 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 ELAVL1Q15717 326 aaKnown RBP11.38□□□□□ -0.59
COL6A3-203ENST00000353578 SLCO4C1Q6ZQN7 724 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 OR52N4Q8NGI2 321 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 A0A087WWC5 75 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 SLC48A1Q6P1K1 146 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 OR52B4Q8NGK2 314 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 TMEM255BQ8WV15 326 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 HINT3Q9NQE9 182 aaKnown RBP11.38□□□□□ -0.59
COL6A3-203ENST00000353578 GPR62Q9BZJ7 368 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 DOCK6Q96HP0 2047 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 M0R082 166 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 CD226Q15762 336 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 PLEKHB1Q9UF11 243 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-203ENST00000353578 BOKQ9UMX3 212 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-203ENST00000353578 PDCD11Q14690 1871 aaKnown RBP11.38□□□□□ -0.59
COL6A3-203ENST00000353578 CXorf51AA0A1B0GTR3 108 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 TLCD2A6NGC4 264 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 ZNF860A6NHJ4 632 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 OR1L1Q8NH94 360 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 FUT9Q9Y231 359 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 CD1AP06126 327 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 MRPL54Q6P161 138 aaKnown RBP11.38□□□□□ -0.59
COL6A3-203ENST00000353578 NUFIP2Q7Z417 695 aaKnown RBP11.38□□□□□ -0.59
COL6A3-203ENST00000353578 OR2J1Q9GZK6 312 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 KLK11Q9UBX7 282 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 ZNF816-ZNF321PA0A0X1KG74 233 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 FXYD1O00168 92 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 GALMQ96C23 342 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 HLA-DQB1P01920 261 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 WNT1P04628 370 aa11.38□□□□□ -0.59
COL6A3-203ENST00000353578 CTXND1A0A1B0GTU2 59 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 C19orf67A6NJJ6 358 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 CTSDP07339 412 aaPredicted RBP11.37□□□□□ -0.59
COL6A3-203ENST00000353578 SERTM2A0A1B0GWG4 89 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 COCHO43405 550 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 OSTM1Q86WC4 334 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 MDC1Q14676 2089 aaKnown RBP11.37□□□□□ -0.59
COL6A3-203ENST00000353578 HNRNPA1L2Q32P51 320 aaKnown RBP11.37□□□□□ -0.59
COL6A3-203ENST00000353578 SMIM21Q3B7S5 101 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 NHLRC3Q5JS37 347 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 BOD1Q96IK1 185 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 MENTQ9BUN1 341 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 TMEFF2Q9UIK5 374 aaPredicted RBP11.37□□□□□ -0.59
COL6A3-203ENST00000353578 ITGB4P16144 1822 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 A0A0G2JLL6 359 aaPredicted RBP11.37□□□□□ -0.59
COL6A3-203ENST00000353578 CLEC18BQ6UXF7 455 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 PRRT2Q7Z6L0 340 aaPredicted RBP11.37□□□□□ -0.59
COL6A3-203ENST00000353578 OBP2BQ9NPH6 170 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 RICTORQ6R327 1708 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 P2RY10O00398 339 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 VASPP50552 380 aaPredicted RBP11.37□□□□□ -0.59
COL6A3-203ENST00000353578 ARF6P62330 175 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 ACVR1Q04771 509 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 SLC17A4Q9Y2C5 497 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 KCNQ2O43526 872 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 SLC6A12P48065 614 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 ZNF766Q5HY98 468 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 ARIH2OSQ8N7S6 290 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 TXNIPQ9H3M7 391 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 SFXN1Q9H9B4 322 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 HMGN4O00479 90 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 SMPD2O60906 423 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 CASP6P55212 293 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 LMAN2Q12907 356 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 OR8B3Q8NGG8 313 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 WDR83Q9BRX9 315 aaKnown RBP11.37□□□□□ -0.59
COL6A3-203ENST00000353578 CHST11Q9NPF2 352 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 YLPM1P49750 1951 aaKnown RBP11.37□□□□□ -0.59
COL6A3-203ENST00000353578 NOTCH3Q9UM47 2321 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 HBZP02008 142 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 C6orf132Q5T0Z8 1188 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 CXorf36Q9H7Y0 433 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 POLEQ07864 2286 aa11.37□□□□□ -0.59
COL6A3-203ENST00000353578 ZNF840PA6NDX5 716 aa11.36□□□□□ -0.59
COL6A3-203ENST00000353578 RER1O15258 196 aa11.36□□□□□ -0.59
COL6A3-203ENST00000353578 MPDU1O75352 247 aa11.36□□□□□ -0.59
COL6A3-203ENST00000353578 GABRA6Q16445 453 aa11.36□□□□□ -0.59
COL6A3-203ENST00000353578 ANKRD55Q3KP44 614 aa11.36□□□□□ -0.59
COL6A3-203ENST00000353578 C1orf140Q5VVS0 124 aa11.36□□□□□ -0.59
COL6A3-203ENST00000353578 TECRQ9NZ01 308 aaKnown RBP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms