RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 GLS2Q9UI32 602 aa15.23■□□□□ 0.03
COL9A1-201ENST00000320755 GPR179Q6PRD1 2367 aa15.23■□□□□ 0.03
COL9A1-201ENST00000320755 OTX2P32243 289 aa15.23■□□□□ 0.03
COL9A1-201ENST00000320755 NTF4P34130 210 aa15.23■□□□□ 0.03
COL9A1-201ENST00000320755 IL11RAQ14626 422 aa15.23■□□□□ 0.03
COL9A1-201ENST00000320755 TMEM54Q969K7 222 aa15.23■□□□□ 0.03
COL9A1-201ENST00000320755 SPTSSAQ969W0 71 aa15.23■□□□□ 0.03
COL9A1-201ENST00000320755 PHYHIPLQ96FC7 376 aa15.23■□□□□ 0.03
COL9A1-201ENST00000320755 CHST5Q9GZS9 411 aa15.23■□□□□ 0.03
COL9A1-201ENST00000320755 CSTBP04080 98 aaKnown RBP15.22■□□□□ 0.03
COL9A1-201ENST00000320755 NAT2P11245 290 aa15.22■□□□□ 0.03
COL9A1-201ENST00000320755 CPT2P23786 658 aa15.22■□□□□ 0.03
COL9A1-201ENST00000320755 CBX5P45973 191 aa15.22■□□□□ 0.03
COL9A1-201ENST00000320755 TAS2R46P59540 309 aa15.22■□□□□ 0.03
COL9A1-201ENST00000320755 FAM189A2Q15884 450 aa15.22■□□□□ 0.03
COL9A1-201ENST00000320755 OR52H1Q8NGJ2 320 aa15.22■□□□□ 0.03
COL9A1-201ENST00000320755 HAS2Q92819 552 aa15.22■□□□□ 0.03
COL9A1-201ENST00000320755 SCGB3A2Q96PL1 93 aa15.22■□□□□ 0.03
COL9A1-201ENST00000320755 WDR54Q9H977 334 aa15.22■□□□□ 0.03
COL9A1-201ENST00000320755 NXT1Q9UKK6 140 aaKnown RBP15.22■□□□□ 0.03
COL9A1-201ENST00000320755 OSGIN2Q9Y236 505 aa15.22■□□□□ 0.03
COL9A1-201ENST00000320755 A0A087WZY1 265 aa15.22■□□□□ 0.03
COL9A1-201ENST00000320755 TEX13DA0A0J9YY54 714 aaPredicted RBP15.22■□□□□ 0.03
COL9A1-201ENST00000320755 MTRF1O75570 445 aaKnown RBP15.22■□□□□ 0.03
COL9A1-201ENST00000320755 IGHV3-9P01782 118 aa15.22■□□□□ 0.03
COL9A1-201ENST00000320755 FKBP2P26885 142 aaKnown RBP15.22■□□□□ 0.03
COL9A1-201ENST00000320755 SRSF3P84103 164 aaKnown RBP15.22■□□□□ 0.03
COL9A1-201ENST00000320755 C10orf128Q5T292 105 aa15.22■□□□□ 0.03
COL9A1-201ENST00000320755 PMS2CLQ68D20 193 aa15.22■□□□□ 0.03
COL9A1-201ENST00000320755 SEMA6DQ8NFY4 1073 aa15.22■□□□□ 0.03
COL9A1-201ENST00000320755 TOMM40LQ969M1 308 aa15.22■□□□□ 0.03
COL9A1-201ENST00000320755 DNTTIP1Q9H147 329 aa15.22■□□□□ 0.03
COL9A1-201ENST00000320755 RAB18Q9NP72 206 aa15.22■□□□□ 0.03
COL9A1-201ENST00000320755 C14orf166Q9Y224 244 aaKnown RBP15.22■□□□□ 0.03
COL9A1-201ENST00000320755 SHANK1Q9Y566 2161 aa15.22■□□□□ 0.03
COL9A1-201ENST00000320755 LOC102723996A0A087X1L8 192 aa15.21■□□□□ 0.03
COL9A1-201ENST00000320755 CCDC187A0A096LP49 1063 aa15.21■□□□□ 0.03
COL9A1-201ENST00000320755 GPR31O00270 319 aa15.21■□□□□ 0.03
COL9A1-201ENST00000320755 SGCEO43556 437 aa15.21■□□□□ 0.03
COL9A1-201ENST00000320755 ONECUT2O95948 504 aa15.21■□□□□ 0.03
COL9A1-201ENST00000320755 RSU1Q15404 277 aa15.21■□□□□ 0.03
COL9A1-201ENST00000320755 EXT1Q16394 746 aa15.21■□□□□ 0.03
COL9A1-201ENST00000320755 LPAL2Q16609 132 aa15.21■□□□□ 0.03
COL9A1-201ENST00000320755 TMEM88Q6PEY1 159 aa15.21■□□□□ 0.03
COL9A1-201ENST00000320755 Q7L0L9 218 aa15.21■□□□□ 0.03
COL9A1-201ENST00000320755 PP6455Q8WZ26 134 aa15.21■□□□□ 0.03
COL9A1-201ENST00000320755 TSNAXQ99598 290 aaKnown RBP15.21■□□□□ 0.03
COL9A1-201ENST00000320755 PRRC2CQ9Y520 2896 aaKnown RBP15.21■□□□□ 0.03
COL9A1-201ENST00000320755 A0A0U1RQV5 110 aa15.21■□□□□ 0.03
COL9A1-201ENST00000320755 BET1O15155 118 aa15.21■□□□□ 0.03
COL9A1-201ENST00000320755 VAMP5O95183 116 aa15.21■□□□□ 0.03
COL9A1-201ENST00000320755 CTSSP25774 331 aa15.21■□□□□ 0.03
COL9A1-201ENST00000320755 ZNF239Q16600 458 aaKnown RBP15.21■□□□□ 0.03
COL9A1-201ENST00000320755 LHFPL1Q86WI0 220 aa15.21■□□□□ 0.03
COL9A1-201ENST00000320755 PIGMQ9H3S5 423 aa15.21■□□□□ 0.03
COL9A1-201ENST00000320755 SMOC1Q9H4F8 434 aa15.21■□□□□ 0.03
COL9A1-201ENST00000320755 ANAPC10Q9UM13 185 aa15.21■□□□□ 0.03
COL9A1-201ENST00000320755 V9GYS6 101 aa15.21■□□□□ 0.03
COL9A1-201ENST00000320755 DOCK7Q96N67 2140 aa15.21■□□□□ 0.02
COL9A1-201ENST00000320755 HGFACQ04756 655 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 ZNF169Q14929 603 aaPredicted RBP15.2■□□□□ 0.02
COL9A1-201ENST00000320755 PLEKHN1Q494U1 663 aaPredicted RBP15.2■□□□□ 0.02
COL9A1-201ENST00000320755 CCDC36Q8IYA8 594 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 REEP6Q96HR9 211 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 SLC6A15Q9H2J7 730 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 CYTL1Q9NRR1 136 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 ZNF705EA8MWA4 302 aaPredicted RBP15.2■□□□□ 0.02
COL9A1-201ENST00000320755 CXCL13O43927 109 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 F12P00748 615 aaPredicted RBP15.2■□□□□ 0.02
COL9A1-201ENST00000320755 RBMXP38159 391 aaKnown RBP15.2■□□□□ 0.02
COL9A1-201ENST00000320755 SP6Q3SY56 376 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 ZNF700Q9H0M5 742 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 HRH4Q9H3N8 390 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 ZNF850A8MQ14 1090 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 CBR3O75828 277 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 SCGB1D2O95969 90 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 ACTL6AO96019 429 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 RFPL3SP0C7P2 107 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 PTGER4P35408 488 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 CARD18P57730 90 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 FXYD4P59646 89 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 RAC1P63000 192 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 IAH1Q2TAA2 248 aaPredicted RBP15.2■□□□□ 0.02
COL9A1-201ENST00000320755 PLXDC2Q6UX71 529 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 PEG10Q86TG7 708 aaKnown RBP15.2■□□□□ 0.02
COL9A1-201ENST00000320755 OR2Y1Q8NGV0 311 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 CPNE2Q96FN4 548 aaPredicted RBP15.2■□□□□ 0.02
COL9A1-201ENST00000320755 C2orf50Q96LR7 162 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 SMIM3Q9BZL3 60 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 NKX6-2Q9C056 277 aaPredicted RBP15.2■□□□□ 0.02
COL9A1-201ENST00000320755 PRDM6Q9NQX0 595 aa15.2■□□□□ 0.02
COL9A1-201ENST00000320755 SERPINE3A8MV23 424 aa15.19■□□□□ 0.02
COL9A1-201ENST00000320755 DNASE2O00115 360 aaPredicted RBP15.19■□□□□ 0.02
COL9A1-201ENST00000320755 PRSS54Q6PEW0 395 aa15.19■□□□□ 0.02
COL9A1-201ENST00000320755 SULF2Q8IWU5 870 aa15.19■□□□□ 0.02
COL9A1-201ENST00000320755 TREM1Q9NP99 234 aa15.19■□□□□ 0.02
COL9A1-201ENST00000320755 GHRLQ9UBU3 117 aa15.19■□□□□ 0.02
COL9A1-201ENST00000320755 FREM1Q5H8C1 2179 aa15.19■□□□□ 0.02
COL9A1-201ENST00000320755 FRYQ5TBA9 3013 aa15.19■□□□□ 0.02
COL9A1-201ENST00000320755 TSPAN9O75954 239 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms