RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 TMPRSS13Q9BYE2 586 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 CALHM2Q9HA72 323 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 YBX2Q9Y2T7 364 aaKnown RBP10.31□□□□□ -0.76
VPS39-201ENST00000318006 PCDHGA9Q9Y5G4 932 aaKnown RBP10.31□□□□□ -0.76
VPS39-201ENST00000318006 TRAV34A0A0B4J273 112 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 CLEC18AA5D8T8 446 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 RBFOX3A6NFN3 312 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 H3BP45 60 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 MFNGO00587 321 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 HS3ST1O14792 307 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 OR2J2O76002 312 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 VAMP5O95183 116 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 RPLP1P05386 114 aaKnown RBP10.31□□□□□ -0.76
VPS39-201ENST00000318006 EMDP50402 254 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 SLC25A1P53007 311 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 TIPARPQ7Z3E1 657 aaKnown RBP10.31□□□□□ -0.76
VPS39-201ENST00000318006 CLEC18CQ8NCF0 446 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 IL22RA2Q969J5 263 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 M0R135 149 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 CRHP06850 196 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 ZNF17P17021 662 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 PTGFRP43088 359 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 SLC26A10Q8NG04 563 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 C8orf44Q96CB5 159 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 ZNF799Q96GE5 643 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 SHARPINQ9H0F6 387 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 FRG2CA6NGY1 282 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 KLRC4-KLRK1H3BQV0 150 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 ERVFC1-1P60608 527 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 TIAL1Q01085 375 aaKnown RBP eCLIP10.31□□□□□ -0.76
VPS39-201ENST00000318006 LAIR1Q6GTX8 287 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 UBALD2Q8IYN6 164 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 COX14Q96I36 57 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 SLC35E1Q96K37 410 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 Q9N2K0 584 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 FBXO34Q9NWN3 711 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 RASL12Q9NYN1 266 aa10.31□□□□□ -0.76
VPS39-201ENST00000318006 TNS1Q9HBL0 1735 aaKnown RBP10.3□□□□□ -0.76
VPS39-201ENST00000318006 AQP7P3A6NL99 342 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 CDRT15L2A8MXV6 281 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 PGA3P0DJD8 388 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 SLC37A1P57057 533 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 ZNF362Q5T0B9 420 aaPredicted RBP10.3□□□□□ -0.76
VPS39-201ENST00000318006 UBE3DQ7Z6J8 389 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 TMEM178AQ8NBL3 297 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 C4orf45Q96LM5 186 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 CFHR5Q9BXR6 569 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 TWSG1Q9GZX9 223 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 SLC31A2O15432 143 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 NMBP08949 121 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 TMEM33P57088 247 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 EIF4EBP2Q13542 120 aaPredicted RBP10.3□□□□□ -0.76
VPS39-201ENST00000318006 KLF9Q13886 244 aaPredicted RBP10.3□□□□□ -0.76
VPS39-201ENST00000318006 IL13RA2Q14627 380 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 SP6Q3SY56 376 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 WDR38Q5JTN6 314 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 C6orf15Q6UXA7 325 aaPredicted RBP10.3□□□□□ -0.76
VPS39-201ENST00000318006 DYRK2Q92630 601 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 NOL4LQ96MY1 436 aaPredicted RBP10.3□□□□□ -0.76
VPS39-201ENST00000318006 PCED1AQ9H1Q7 454 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 PTPRZ1P23471 2315 aaPredicted RBP10.3□□□□□ -0.76
VPS39-201ENST00000318006 MASP2O00187 686 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 OR7C2O60412 319 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 GPR3P46089 330 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 PCBP3P57721 371 aaKnown RBP10.3□□□□□ -0.76
VPS39-201ENST00000318006 CEBPEQ15744 281 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 DMKNQ6E0U4 476 aaPredicted RBP10.3□□□□□ -0.76
VPS39-201ENST00000318006 PWWP2BQ6NUJ5 590 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 NMES1Q9C002 83 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 CHST6Q9GZX3 395 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 RIMS4Q9H426 269 aaPredicted RBP10.3□□□□□ -0.76
VPS39-201ENST00000318006 OR2W5A6NFC9 320 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 B4DEV8 164 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 CTSVO60911 334 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 NRASP01111 189 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 POU2F2P09086 479 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 ZGLP1P0C6A0 271 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 CT45A10P0DMU9 189 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 HIST1H1DP16402 221 aaKnown RBP10.3□□□□□ -0.76
VPS39-201ENST00000318006 ABOP16442 354 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 ABLIM2Q6H8Q1 611 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 DGAT2L6Q6ZPD8 337 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 BATF2Q8N1L9 274 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 AMER3Q8N944 861 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 SNX22Q96L94 193 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 SIRT7Q9NRC8 400 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 PPP1R14DQ9NXH3 145 aa10.3□□□□□ -0.76
VPS39-201ENST00000318006 DUXBA0A1W2PPF3 345 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 FAM166BA8MTA8 275 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 ARPC3O15145 178 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 TTRP02766 147 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 ACAA1P09110 424 aaPredicted RBP10.29□□□□□ -0.76
VPS39-201ENST00000318006 GLRA1P23415 457 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 PET117Q6UWS5 81 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 OR5C1Q8NGR4 320 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 TMEM9BQ9NQ34 198 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 NAT8BQ9UHF3 227 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 LRP12Q9Y561 859 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 MAP1LC3B2A6NCE7 125 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 C4orf47A7E2U8 309 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms