RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 PIK3IP1Q96FE7 263 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 NRIP2Q9BQI9 281 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 BCO1Q9HAY6 547 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 TNFSF14O43557 240 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 RECKO95980 971 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 IL2RGP31785 369 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 MSMO1Q15800 293 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 NKAIN1Q4KMZ8 207 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 COMMD1Q8N668 190 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 TMEM68Q96MH6 324 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 CNTD2Q9H8S5 307 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 CBY1Q9Y3M2 126 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 ZNF816-ZNF321PA0A0X1KG74 233 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 HSBP1L1C9JCN9 74 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 PTP4A3O75365 173 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 YIF1AO95070 293 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 FGF2P09038 288 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 ZNF321PQ8N8H1 164 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 MS4A3Q96HJ5 214 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 LOC102725191A0A1B0GVB3 256 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 CT62P0C5K7 136 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 MSR1P21757 451 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 FPR2P25090 351 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 RPL29P47914 159 aaKnown RBP13.7□□□□□ -0.22
SHH-201ENST00000297261 SULT1A1P50225 295 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 SCAND1P57086 179 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 DBX2Q6ZNG2 339 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 GLRX5Q86SX6 157 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 ZNF383Q8NA42 475 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 RCL1Q9Y2P8 373 aaKnown RBP13.7□□□□□ -0.22
SHH-201ENST00000297261 IGHV1OR21-1A0A087WYE8 117 aa13.69□□□□□ -0.22
SHH-201ENST00000297261 CCDC187A0A096LP49 1063 aa13.69□□□□□ -0.22
SHH-201ENST00000297261 ZFAND5O76080 213 aa13.69□□□□□ -0.22
SHH-201ENST00000297261 MPZL1O95297 269 aa13.69□□□□□ -0.22
SHH-201ENST00000297261 ACKR3P25106 362 aa13.69□□□□□ -0.22
SHH-201ENST00000297261 LIPHQ8WWY8 451 aa13.69□□□□□ -0.22
SHH-201ENST00000297261 C4orf51C9J302 202 aa13.69□□□□□ -0.22
SHH-201ENST00000297261 MT-CO2P00403 227 aa13.69□□□□□ -0.22
SHH-201ENST00000297261 HPP00738 406 aa13.69□□□□□ -0.22
SHH-201ENST00000297261 MUC1P15941 1255 aaPredicted RBP13.69□□□□□ -0.22
SHH-201ENST00000297261 ZP1P60852 638 aa13.69□□□□□ -0.22
SHH-201ENST00000297261 CLEC18BQ6UXF7 455 aa13.69□□□□□ -0.22
SHH-201ENST00000297261 OR4F5Q8NH21 305 aa13.69□□□□□ -0.22
SHH-201ENST00000297261 GPX8Q8TED1 209 aa13.69□□□□□ -0.22
SHH-201ENST00000297261 SLC25A38Q96DW6 304 aa13.69□□□□□ -0.22
SHH-201ENST00000297261 FAM210BQ96KR6 192 aa13.69□□□□□ -0.22
SHH-201ENST00000297261 OR4F4Q96R69 305 aa13.69□□□□□ -0.22
SHH-201ENST00000297261 TRAPPC2LQ9UL33 140 aa13.69□□□□□ -0.22
SHH-201ENST00000297261 NSG1A0A0A6YYJ2 146 aa13.69□□□□□ -0.22
SHH-201ENST00000297261 ADRA2AP08913 450 aa13.69□□□□□ -0.22
SHH-201ENST00000297261 FAHP16930 419 aa13.69□□□□□ -0.22
SHH-201ENST00000297261 NCR3LG1Q68D85 454 aa13.69□□□□□ -0.22
SHH-201ENST00000297261 FAM199XQ6PEV8 388 aaPredicted RBP13.69□□□□□ -0.22
SHH-201ENST00000297261 TCF20Q9UGU0 1960 aaKnown RBP13.68□□□□□ -0.22
SHH-201ENST00000297261 TUSC2O75896 110 aa13.68□□□□□ -0.22
SHH-201ENST00000297261 ONECUT2O95948 504 aa13.68□□□□□ -0.22
SHH-201ENST00000297261 CTLA4P16410 223 aa13.68□□□□□ -0.22
SHH-201ENST00000297261 ZNF121P58317 390 aaPredicted RBP13.68□□□□□ -0.22
SHH-201ENST00000297261 MRPL49Q13405 166 aaKnown RBP13.68□□□□□ -0.22
SHH-201ENST00000297261 OR13D1Q8NGV5 346 aa13.68□□□□□ -0.22
SHH-201ENST00000297261 SCARF2Q96GP6 870 aaPredicted RBP13.68□□□□□ -0.22
SHH-201ENST00000297261 LAT2Q9GZY6 243 aa13.68□□□□□ -0.22
SHH-201ENST00000297261 GVINP1Q7Z2Y8 2422 aa13.68□□□□□ -0.22
SHH-201ENST00000297261 HIST1H1DP16402 221 aaKnown RBP13.68□□□□□ -0.22
SHH-201ENST00000297261 PAX6P26367 422 aa13.68□□□□□ -0.22
SHH-201ENST00000297261 GRB2P62993 217 aaKnown RBP13.68□□□□□ -0.22
SHH-201ENST00000297261 LTC4SQ16873 150 aa13.68□□□□□ -0.22
SHH-201ENST00000297261 PRICKLE4Q2TBC4 344 aa13.68□□□□□ -0.22
SHH-201ENST00000297261 HLA-BQ31612 363 aa13.68□□□□□ -0.22
SHH-201ENST00000297261 PGLYRP3Q96LB9 341 aa13.68□□□□□ -0.22
SHH-201ENST00000297261 SEC14L6B5MCN3 397 aa13.68□□□□□ -0.22
SHH-201ENST00000297261 ARHGEF39Q8N4T4 335 aa13.68□□□□□ -0.22
SHH-201ENST00000297261 BHLHE23Q8NDY6 225 aa13.68□□□□□ -0.22
SHH-201ENST00000297261 C11orf40Q8WZ69 217 aa13.68□□□□□ -0.22
SHH-201ENST00000297261 MVB12AQ96EY5 273 aa13.68□□□□□ -0.22
SHH-201ENST00000297261 DNAJB11Q9UBS4 358 aa13.68□□□□□ -0.22
SHH-201ENST00000297261 ANKRD30BLA7E2S9 258 aa13.68□□□□□ -0.22
SHH-201ENST00000297261 RBP2P50120 134 aa13.68□□□□□ -0.22
SHH-201ENST00000297261 ADAD2Q8NCV1 583 aaKnown RBP13.68□□□□□ -0.22
SHH-201ENST00000297261 TSPAN32Q96QS1 320 aa13.68□□□□□ -0.22
SHH-201ENST00000297261 FSCN3Q9NQT6 498 aa13.68□□□□□ -0.22
SHH-201ENST00000297261 RYDENQ9NUL5 291 aaKnown RBP13.68□□□□□ -0.22
SHH-201ENST00000297261 CLDN34H7C241 214 aa13.67□□□□□ -0.22
SHH-201ENST00000297261 IAPPP10997 89 aa13.67□□□□□ -0.22
SHH-201ENST00000297261 CDAP32320 146 aa13.67□□□□□ -0.22
SHH-201ENST00000297261 SLC25A42Q86VD7 318 aa13.67□□□□□ -0.22
SHH-201ENST00000297261 IFI44Q8TCB0 444 aa13.67□□□□□ -0.22
SHH-201ENST00000297261 PLXNA4Q9HCM2 1894 aa13.67□□□□□ -0.22
SHH-201ENST00000297261 FIGNL2A6NMB9 653 aa13.67□□□□□ -0.22
SHH-201ENST00000297261 CDRT15L2A8MXV6 281 aa13.67□□□□□ -0.22
SHH-201ENST00000297261 EFSO43281 561 aa13.67□□□□□ -0.22
SHH-201ENST00000297261 EIF3GO75821 320 aaKnown RBP eCLIP13.67□□□□□ -0.22
SHH-201ENST00000297261 CALCRP30988 508 aa13.67□□□□□ -0.22
SHH-201ENST00000297261 GPR3P46089 330 aa13.67□□□□□ -0.22
SHH-201ENST00000297261 ERVK-16P61578 105 aa13.67□□□□□ -0.22
SHH-201ENST00000297261 RPS15P62841 145 aaKnown RBP13.67□□□□□ -0.22
SHH-201ENST00000297261 PDCD1Q15116 288 aa13.67□□□□□ -0.22
SHH-201ENST00000297261 C1QL3Q5VWW1 255 aa13.67□□□□□ -0.22
SHH-201ENST00000297261 OR51F2Q8NH61 342 aa13.67□□□□□ -0.22
SHH-201ENST00000297261 ZPLD1Q8TCW7 415 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms