RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 STX19Q8N4C7 294 aa11.16□□□□□ -0.62
VPS28-201ENST00000292510 CCDC54Q8NEL0 328 aa11.16□□□□□ -0.62
VPS28-201ENST00000292510 OR13C3Q8NGS6 347 aa11.16□□□□□ -0.62
VPS28-201ENST00000292510 OR5AK2Q8NH90 309 aa11.16□□□□□ -0.62
VPS28-201ENST00000292510 AQP3Q92482 292 aa11.16□□□□□ -0.62
VPS28-201ENST00000292510 SGCDQ92629 289 aa11.16□□□□□ -0.62
VPS28-201ENST00000292510 ANKRD60Q9BZ19 345 aa11.16□□□□□ -0.62
VPS28-201ENST00000292510 CHST5Q9GZS9 411 aa11.16□□□□□ -0.62
VPS28-201ENST00000292510 FKBP14Q9NWM8 211 aa11.16□□□□□ -0.62
VPS28-201ENST00000292510 CHCHD3Q9NX63 227 aaKnown RBP11.16□□□□□ -0.62
VPS28-201ENST00000292510 CTSZQ9UBR2 303 aa11.16□□□□□ -0.62
VPS28-201ENST00000292510 MIOXQ9UGB7 285 aa11.16□□□□□ -0.62
VPS28-201ENST00000292510 HHLA2Q9UM44 414 aa11.16□□□□□ -0.62
VPS28-201ENST00000292510 PCDHGB5Q9Y5G0 923 aa11.16□□□□□ -0.62
VPS28-201ENST00000292510 SIRT4Q9Y6E7 314 aaPredicted RBP11.16□□□□□ -0.62
VPS28-201ENST00000292510 TRAV38-1A0A0B4J264 116 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 TRAV20A0A0B4J274 112 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 TRBV2A0A0J9YWF9 115 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 A0A1B0GW55 424 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 FAM230AA0A1W2PPH8 454 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 PTGES3LE9PB15 166 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 TNFRSF13BO14836 293 aaPredicted RBP11.15□□□□□ -0.62
VPS28-201ENST00000292510 SYNGR1O43759 233 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 TFF1P04155 84 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 CCDC159P0C7I6 412 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 DUX4L2P0CJ85 424 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 DUX4L3P0CJ86 424 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 DUX4L4P0CJ87 422 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 DUX4L5P0CJ88 424 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 DUX4L6P0CJ89 424 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 DUX4L7P0CJ90 424 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 ZNF12P17014 697 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 ZNF20P17024 532 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 CFHR2P36980 270 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 VHLP40337 213 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 HAAOP46952 286 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 HSPA13P48723 471 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 MED21Q13503 144 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 CDK5R1Q15078 307 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 ESCO2Q56NI9 601 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 TEX36Q5VZQ5 186 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 FAHD2BQ6P2I3 314 aaPredicted RBP11.15□□□□□ -0.62
VPS28-201ENST00000292510 DUX4L9Q6RFH8 374 aaPredicted RBP11.15□□□□□ -0.62
VPS28-201ENST00000292510 ANGPTL5Q86XS5 388 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 BATF2Q8N1L9 274 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 ZFP41Q8N8Y5 198 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 ZNF485Q8NCK3 441 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 OR5T2Q8NGG2 359 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 OR8B3Q8NGG8 313 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 OR10Z1Q8NGY1 313 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 OR52N1Q8NH53 320 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 RGP1Q92546 391 aaPredicted RBP11.15□□□□□ -0.62
VPS28-201ENST00000292510 NEIL1Q96FI4 390 aaPredicted RBP11.15□□□□□ -0.62
VPS28-201ENST00000292510 FAHD2AQ96GK7 314 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 CNBD2Q96M20 576 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 ZNF488Q96MN9 340 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 OR8B2Q96RD0 313 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 COMMD4Q9H0A8 199 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 SHARPINQ9H0F6 387 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 RASSF4Q9H2L5 321 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 MMP26Q9NRE1 261 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 SNTG1Q9NSN8 517 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 PAK1IP1Q9NWT1 392 aaPredicted RBP11.15□□□□□ -0.62
VPS28-201ENST00000292510 TMEM160Q9NX00 188 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 BABAM2Q9NXR7 383 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 DUX4Q9UBX2 424 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 SLC7A11Q9UPY5 501 aa11.15□□□□□ -0.62
VPS28-201ENST00000292510 MXRA5Q9NR99 2828 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 IGKV1-27A0A075B6S5 117 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 IGKV1-9A0A0C4DH69 117 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 TMEM212A6NML5 194 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 A8MXK9 166 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 TRAPPC2LH3BP13 241 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 ADAM20O43506 726 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 FOXH1O75593 365 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 GATBO75879 557 aaKnown RBP11.14□□□□□ -0.63
VPS28-201ENST00000292510 PITPNBP48739 271 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 RIPPLY3P57055 190 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 KCNJ8Q15842 424 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 MICBQ29980 383 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 CHRFAM7AQ494W8 412 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 RPL22L1Q6P5R6 122 aaKnown RBP11.14□□□□□ -0.63
VPS28-201ENST00000292510 ZNF841Q6ZN19 808 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 CALHM1Q8IU99 346 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 PP6455Q8WZ26 134 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 C10orf35Q96D05 121 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 POM121Q96HA1 1249 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 CCL13Q99616 98 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 SSBP3Q9BWW4 388 aaPredicted RBP11.14□□□□□ -0.63
VPS28-201ENST00000292510 BEX2Q9BXY8 128 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 CDC42EP3Q9UKI2 254 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 LRCH1Q9Y2L9 728 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 WNK2Q9Y3S1 2297 aa11.14□□□□□ -0.63
VPS28-201ENST00000292510 PNMA8CA0A1B0GUJ8 204 aa11.13□□□□□ -0.63
VPS28-201ENST00000292510 J3QT63 122 aa11.13□□□□□ -0.63
VPS28-201ENST00000292510 MYL12BO14950 172 aa11.13□□□□□ -0.63
VPS28-201ENST00000292510 OGG1O15527 345 aa11.13□□□□□ -0.63
VPS28-201ENST00000292510 FCN3O75636 299 aa11.13□□□□□ -0.63
VPS28-201ENST00000292510 INMTO95050 263 aa11.13□□□□□ -0.63
VPS28-201ENST00000292510 PLATP00750 562 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms