RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 RP2O75695 350 aa13.29□□□□□ -0.28
SF3B4-201ENST00000271628 B3GALNT1O75752 331 aa13.29□□□□□ -0.28
SF3B4-201ENST00000271628 ZNF250P15622 560 aa13.29□□□□□ -0.28
SF3B4-201ENST00000271628 HLXQ14774 488 aaPredicted RBP13.29□□□□□ -0.28
SF3B4-201ENST00000271628 GABRG1Q8N1C3 465 aa13.29□□□□□ -0.28
SF3B4-201ENST00000271628 OR56B1Q8NGI3 324 aa13.29□□□□□ -0.28
SF3B4-201ENST00000271628 TNFAIP8L1Q8WVP5 186 aa13.29□□□□□ -0.28
SF3B4-201ENST00000271628 NANOS1Q8WY41 292 aaKnown RBP13.29□□□□□ -0.28
SF3B4-201ENST00000271628 PLSCR2Q9NRY7 297 aa13.29□□□□□ -0.28
SF3B4-201ENST00000271628 RTTNQ86VV8 2226 aa13.29□□□□□ -0.28
SF3B4-201ENST00000271628 ARHGAP21Q5T5U3 1957 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 CRTAPO75718 401 aaPredicted RBP13.28□□□□□ -0.28
SF3B4-201ENST00000271628 PPP3CBP16298 524 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 ZNF92Q03936 586 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 OR8B8Q15620 311 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 TMEM42Q69YG0 159 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 TMUB2Q71RG4 321 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 TMEM104Q8NE00 496 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 STEAP2Q8NFT2 490 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 OR1K1Q8NGR3 316 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 SNIP1Q8TAD8 396 aaKnown RBP13.28□□□□□ -0.28
SF3B4-201ENST00000271628 NPRL2Q8WTW4 380 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 MYOZ1Q9NP98 299 aaPredicted RBP13.28□□□□□ -0.28
SF3B4-201ENST00000271628 FRYQ5TBA9 3013 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 LOC100509620A0A075B734 347 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 ARPC5O15511 151 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 NRASP01111 189 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 GSTP1P09211 210 aaKnown RBP13.28□□□□□ -0.28
SF3B4-201ENST00000271628 MTCP1P56278 107 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 BAMBIQ13145 260 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 RSPO4Q2I0M5 234 aaPredicted RBP13.28□□□□□ -0.28
SF3B4-201ENST00000271628 SLC22A6Q4U2R8 563 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 C4orf46Q504U0 113 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 CRIP3Q6Q6R5 217 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 LHFPL2Q6ZUX7 228 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 ZNF584Q8IVC4 421 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 SCARB1Q8WTV0 552 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 PCNPQ8WW12 178 aaKnown RBP13.28□□□□□ -0.28
SF3B4-201ENST00000271628 PIGTQ969N2 578 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 TRIB1Q96RU8 372 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 SELENOIQ9C0D9 397 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 GPR173Q9NS66 373 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 SPEF1Q9Y4P9 236 aa13.28□□□□□ -0.28
SF3B4-201ENST00000271628 ZNF816-ZNF321PA0A0X1KG74 233 aa13.27□□□□□ -0.28
SF3B4-201ENST00000271628 hCG_1807616A0A1W2PRN6 198 aa13.27□□□□□ -0.28
SF3B4-201ENST00000271628 C5orf49A4QMS7 147 aa13.27□□□□□ -0.28
SF3B4-201ENST00000271628 H3BUI4 141 aa13.27□□□□□ -0.28
SF3B4-201ENST00000271628 GOSR2O14653 212 aa13.27□□□□□ -0.28
SF3B4-201ENST00000271628 RAB3DO95716 219 aa13.27□□□□□ -0.28
SF3B4-201ENST00000271628 IL18BPO95998 194 aa13.27□□□□□ -0.28
SF3B4-201ENST00000271628 SERPINA5P05154 406 aa13.27□□□□□ -0.28
SF3B4-201ENST00000271628 EDN3P14138 238 aa13.27□□□□□ -0.28
SF3B4-201ENST00000271628 CCNOP22674 350 aa13.27□□□□□ -0.28
SF3B4-201ENST00000271628 RBP2P50120 134 aa13.27□□□□□ -0.28
SF3B4-201ENST00000271628 TGFBR3Q03167 851 aa13.27□□□□□ -0.28
SF3B4-201ENST00000271628 MALLQ13021 153 aa13.27□□□□□ -0.28
SF3B4-201ENST00000271628 ARL6IP1Q15041 203 aa13.27□□□□□ -0.28
SF3B4-201ENST00000271628 FAM214BQ7L5A3 538 aa13.27□□□□□ -0.28
SF3B4-201ENST00000271628 FAM89BQ8N5H3 189 aa13.27□□□□□ -0.28
SF3B4-201ENST00000271628 OR8S1Q8NH09 359 aa13.27□□□□□ -0.28
SF3B4-201ENST00000271628 APOBEC3DQ96AK3 386 aaPredicted RBP13.27□□□□□ -0.28
SF3B4-201ENST00000271628 RAB3CQ96E17 227 aa13.27□□□□□ -0.28
SF3B4-201ENST00000271628 BORCS8Q96FH0 119 aa13.27□□□□□ -0.28
SF3B4-201ENST00000271628 WDR89Q96FK6 387 aaPredicted RBP13.27□□□□□ -0.28
SF3B4-201ENST00000271628 SLC7A11Q9UPY5 501 aa13.27□□□□□ -0.28
SF3B4-201ENST00000271628 GVINP1Q7Z2Y8 2422 aa13.27□□□□□ -0.29
SF3B4-201ENST00000271628 WIPF3A6NGB9 483 aa13.27□□□□□ -0.29
SF3B4-201ENST00000271628 AHRRA9YTQ3 701 aa13.27□□□□□ -0.29
SF3B4-201ENST00000271628 ZNF736B4DX44 427 aaPredicted RBP13.27□□□□□ -0.29
SF3B4-201ENST00000271628 CNOT4O95628 575 aaKnown RBP13.27□□□□□ -0.29
SF3B4-201ENST00000271628 ZNF35P13682 527 aa13.27□□□□□ -0.29
SF3B4-201ENST00000271628 EIF2S3P41091 472 aaKnown RBP13.27□□□□□ -0.29
SF3B4-201ENST00000271628 FUT6P51993 359 aa13.27□□□□□ -0.29
SF3B4-201ENST00000271628 RPS27AP62979 156 aaKnown RBP13.27□□□□□ -0.29
SF3B4-201ENST00000271628 C2orf68Q2NKX9 166 aa13.27□□□□□ -0.29
SF3B4-201ENST00000271628 C11orf88Q6PI97 169 aa13.27□□□□□ -0.29
SF3B4-201ENST00000271628 FJX1Q86VR8 437 aa13.27□□□□□ -0.29
SF3B4-201ENST00000271628 OR5D18Q8NGL1 313 aa13.27□□□□□ -0.29
SF3B4-201ENST00000271628 BCL2L2Q92843 193 aaPredicted RBP13.27□□□□□ -0.29
SF3B4-201ENST00000271628 WBP1Q96G27 269 aa13.27□□□□□ -0.29
SF3B4-201ENST00000271628 CCDC120Q96HB5 630 aa13.27□□□□□ -0.29
SF3B4-201ENST00000271628 NICN1Q9BSH3 213 aa13.27□□□□□ -0.29
SF3B4-201ENST00000271628 ARL6Q9H0F7 186 aa13.27□□□□□ -0.29
SF3B4-201ENST00000271628 BANF2Q9H503 90 aa13.27□□□□□ -0.29
SF3B4-201ENST00000271628 OR14I1A6ND48 311 aa13.26□□□□□ -0.29
SF3B4-201ENST00000271628 SIX6O95475 246 aa13.26□□□□□ -0.29
SF3B4-201ENST00000271628 CD74P04233 296 aa13.26□□□□□ -0.29
SF3B4-201ENST00000271628 GNB3P16520 340 aa13.26□□□□□ -0.29
SF3B4-201ENST00000271628 MEF2DQ14814 521 aa13.26□□□□□ -0.29
SF3B4-201ENST00000271628 PNLIPRP3Q17RR3 467 aa13.26□□□□□ -0.29
SF3B4-201ENST00000271628 DMRTC1Q5HYR2 192 aa13.26□□□□□ -0.29
SF3B4-201ENST00000271628 OR2A2Q6IF42 318 aa13.26□□□□□ -0.29
SF3B4-201ENST00000271628 RGS7BPQ6MZT1 257 aaPredicted RBP13.26□□□□□ -0.29
SF3B4-201ENST00000271628 TRAPPC6BQ86SZ2 158 aa13.26□□□□□ -0.29
SF3B4-201ENST00000271628 CCDC36Q8IYA8 594 aa13.26□□□□□ -0.29
SF3B4-201ENST00000271628 OR51T1Q8NGJ9 327 aa13.26□□□□□ -0.29
SF3B4-201ENST00000271628 DVL3Q92997 716 aaPredicted RBP13.26□□□□□ -0.29
SF3B4-201ENST00000271628 WNT2BQ93097 391 aa13.26□□□□□ -0.29
SF3B4-201ENST00000271628 CMBLQ96DG6 245 aa13.26□□□□□ -0.29
SF3B4-201ENST00000271628 POM121L2Q96KW2 1035 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms